Resource
| Id | Histone_ChIP-seq/ENCSR056GGE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR056GGE [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN838BWB|/analyses/ENCAN838BWB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF857EPZ|/files/ENCFF857EPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF857EPZ|/files/ENCFF857EPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.59. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR056GGE | float |
Histone_ChIP-seq_ENCSR056GGE |
Histone_ChIP-seq ENCSR056GGE [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K4me1"]
|
 |
[1.55, 17] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 216348982 | 6.72% | 152741 |
| chr1 | 21735856 | 8.73% | 14841 |
| chr2 | 17768454 | 7.34% | 12574 |
| chr3 | 15755509 | 7.95% | 11067 |
| chr4 | 9485031 | 4.99% | 7282 |
| chr5 | 12565344 | 6.92% | 9143 |
| chr6 | 12226426 | 7.16% | 9189 |
| chr7 | 10325880 | 6.48% | 7782 |
| chr8 | 9563960 | 6.59% | 7056 |
| chr9 | 9210220 | 6.66% | 6385 |
| chr10 | 11914038 | 8.90% | 8132 |
| chr11 | 11402245 | 8.44% | 7803 |
| chr12 | 10520074 | 7.89% | 7353 |
| chr13 | 5527836 | 4.83% | 4124 |
| chr14 | 6857270 | 6.41% | 4656 |
| chr15 | 8156418 | 8.00% | 5540 |
| chr16 | 6860657 | 7.59% | 4735 |
| chr17 | 9843423 | 11.82% | 6405 |
| chr18 | 4674440 | 5.82% | 3544 |
| chr19 | 6486575 | 11.07% | 4408 |
| chr20 | 5785698 | 8.98% | 3820 |
| chr21 | 2088544 | 4.47% | 1563 |
| chr22 | 5009689 | 9.86% | 3100 |
| chrX | 2522760 | 1.62% | 2171 |
| chrY | 62635 | 0.11% | 68 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 152741 | 210 | 48892 | 1416.44 | 997 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF764OBT.bed.gz | 3.56 MB | 9f07ab8bbdcb19c5f146dbcadb5521f2 |
| ENCFF764OBT.tabix.bed.gz | 1.59 MB | a0d3d4a345b5f3229417b12d7bcc8dd5 |
| ENCFF764OBT.tabix.bed.gz.tbi | 328.19 KB | 96a7fbea24909f68c741bd963992cff0 |
| genomic_resource.yaml | 2.79 KB | c305d653c48f2d79067e66da2f6e3726 |
| statistics/ |