Resource
| Id | Histone_ChIP-seq/ENCSR051FXN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR051FXN [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN313INN|/analyses/ENCAN313INN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF519BYJ|/files/ENCFF519BYJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27813184 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR051FXN | float |
Histone_ChIP-seq_ENCSR051FXN |
Histone_ChIP-seq ENCSR051FXN [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)" and target="H3K4me1"]
|
 |
[1.86, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49799249 | 1.55% | 73013 |
| chr1 | 5420567 | 2.18% | 7586 |
| chr2 | 3658267 | 1.51% | 5419 |
| chr3 | 2871637 | 1.45% | 4375 |
| chr4 | 1457190 | 0.77% | 2353 |
| chr5 | 2295724 | 1.26% | 3550 |
| chr6 | 2386530 | 1.40% | 3848 |
| chr7 | 2027313 | 1.27% | 3261 |
| chr8 | 1776288 | 1.22% | 2773 |
| chr9 | 2556655 | 1.85% | 3593 |
| chr10 | 2758718 | 2.06% | 3923 |
| chr11 | 3429241 | 2.54% | 4720 |
| chr12 | 2257260 | 1.69% | 3286 |
| chr13 | 892912 | 0.78% | 1484 |
| chr14 | 1772704 | 1.66% | 2612 |
| chr15 | 1787482 | 1.75% | 2632 |
| chr16 | 1958312 | 2.17% | 2841 |
| chr17 | 3333023 | 4.00% | 4389 |
| chr18 | 851134 | 1.06% | 1387 |
| chr19 | 2285212 | 3.90% | 3107 |
| chr20 | 1611445 | 2.50% | 2256 |
| chr21 | 482697 | 1.03% | 792 |
| chr22 | 1622820 | 3.19% | 2137 |
| chrX | 305365 | 0.20% | 686 |
| chrY | 753 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73013 | 235 | 11893 | 682.06 | 537 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF443JSF.bed.gz | 1.45 MB | 94b895b02f934c5d2287168163ad4a57 |
| ENCFF443JSF.tabix.bed.gz | 732.8 KB | 736d6a1168c612099bd900fbc0a2e5d4 |
| ENCFF443JSF.tabix.bed.gz.tbi | 238.41 KB | 02da72bd9ffa68ffca0dc3bd287292e3 |
| genomic_resource.yaml | 2.05 KB | b9cbd59d51902d144330f7000efa19de |
| statistics/ |