Resource

Id Histone_ChIP-seq/ENCSR050SCZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR050SCZ [biosample_summary="Homo sapiens trophoblast tissue female embryo (20 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR050SCZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000088/
  • biosample_summary: Homo sapiens trophoblast tissue female embryo (20 weeks)
  • date_created: 2017-03-22T16:17:04.006683+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR050SCZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR050SCZ float

Histone_ChIP-seq_ENCSR050SCZ
Histone_ChIP-seq ENCSR050SCZ [biosample_summary="Homo sapiens trophoblast tissue female embryo (20 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR050SCZ [1.51, 15.1]
n
81,508,068
mean
5.18
sd
1.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 815080682.53% 113310
chr1 8569870 3.44% 11456
chr1_KI270711v1_random 568 1.35% 1
chr1_KI270712v1_random 279 0.16% 1
chr1_KI270713v1_random 336 0.82% 1
chr2 7100062 2.93% 9894
chr3 6310832 3.18% 8843
chr4 3950787 2.08% 5913
chr5 4791791 2.64% 6802
chr6 5492385 3.22% 7752
chr7 4064400 2.55% 5938
chr8 3995479 2.75% 5597
chr9 3916063 2.83% 5313
chr10 4120240 3.08% 5672
chr11 4166411 3.08% 5476
chr12 4022118 3.02% 5735
chr13 2395538 2.09% 3440
chr14 2539536 2.37% 3363
chr15 2968481 2.91% 4022
chr16 1803536 2.00% 2472
chr16_KI270728v1_random 459 0.02% 1
chr17 2877779 3.46% 3899
chr17_GL000205v2_random 7710 4.15% 9
chr18 1697561 2.11% 2477
chr19 1523608 2.60% 2023
chr20 2121072 3.29% 2754
chr21 966808 2.07% 1396
chr22 1278592 2.52% 1603
chrUn_GL000195v1 3235 1.77% 7
chrUn_GL000219v1 1840 1.03% 4
chrX 820692 0.53% 1446
3336 contigs with no values (183625058 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113310 235 11736 719.34 578
global segment-length histogram

Files

Filename Size md5
ENCFF660ZYO.bed.gz 2.24 MB 894c0eed43f87e3c51cd0f91bdbe2407
ENCFF660ZYO.tabix.bed.gz 1.08 MB 09c15e73283e36cdd096593a66470751
ENCFF660ZYO.tabix.bed.gz.tbi 339.5 KB 56427f9e91cdb4a48bfc4a29fa5e7336
genomic_resource.yaml 2.01 KB 331f2bffe8d898b0e86381a3a3bd857d
statistics/