Resource

Id Histone_ChIP-seq/ENCSR049KURcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR049KUR [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR049KUR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:43.762203+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR049KUR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR049KUR float

Histone_ChIP-seq_ENCSR049KUR
Histone_ChIP-seq ENCSR049KUR [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR049KUR [1.8, 31.3]
n
60,943,676
mean
14.1
sd
6.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 609436761.89% 36406
chr1 5873675 2.36% 3454
chr2 4363884 1.80% 2617
chr3 3720732 1.88% 2161
chr4 2630109 1.38% 1580
chr5 3183450 1.75% 1884
chr6 3650239 2.14% 2180
chr7 2992133 1.88% 1880
chr8 2492793 1.72% 1513
chr9 2510305 1.81% 1552
chr10 2702753 2.02% 1630
chr11 3236872 2.40% 1826
chr12 3212441 2.41% 1832
chr13 1482201 1.30% 938
chr14 1982358 1.85% 1166
chr15 1882299 1.85% 1130
chr16 2222005 2.46% 1348
chr17 3158728 3.79% 1844
chr18 1218257 1.52% 753
chr19 3386788 5.78% 2029
chr20 1505448 2.34% 930
chr21 595269 1.27% 382
chr22 1279713 2.52% 767
chrX 1661224 1.06% 1010
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36406 230 35129 1674 1199.5
global segment-length histogram

Files

Filename Size md5
ENCFF419QWJ.bed.gz 893.2 KB 09c890974a7b418ab57964060ba8bc8f
ENCFF419QWJ.tabix.bed.gz 405.19 KB 5b669a866de7564af33793828e087e5c
ENCFF419QWJ.tabix.bed.gz.tbi 206.22 KB aeddc848e588218eb77590c4be0c2174
genomic_resource.yaml 1.77 KB 84db985d678bbff9c11ed341606ed2cd
statistics/