Resource
| Id | Histone_ChIP-seq/ENCSR048JDL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR048JDL [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN957NZZ|/analyses/ENCAN957NZZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF036UPU|/files/ENCFF036UPU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 28310595 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR048JDL | float |
Histone_ChIP-seq_ENCSR048JDL |
Histone_ChIP-seq ENCSR048JDL [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K36me3"]
|
 |
[1.75, 14.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 81490184 | 2.53% | 90135 |
| chr1 | 8389991 | 3.37% | 8933 |
| chr1_KI270711v1_random | 618 | 1.46% | 1 |
| chr2 | 6155272 | 2.54% | 7110 |
| chr3 | 5079061 | 2.56% | 5810 |
| chr4 | 3011626 | 1.58% | 3766 |
| chr5 | 3756281 | 2.07% | 4371 |
| chr6 | 3644853 | 2.13% | 4140 |
| chr7 | 3422799 | 2.15% | 3982 |
| chr8 | 2515484 | 1.73% | 2957 |
| chr9 | 4105511 | 2.97% | 4293 |
| chr10 | 3780666 | 2.83% | 4246 |
| chr11 | 4558419 | 3.37% | 4784 |
| chr12 | 4664577 | 3.50% | 4981 |
| chr13 | 1591776 | 1.39% | 1938 |
| chr14 | 2828329 | 2.64% | 3150 |
| chr15 | 3068551 | 3.01% | 3519 |
| chr16 | 3820755 | 4.23% | 3965 |
| chr17 | 4766556 | 5.73% | 4939 |
| chr18 | 1179488 | 1.47% | 1485 |
| chr19 | 4546357 | 7.76% | 4675 |
| chr20 | 2613761 | 4.06% | 2794 |
| chr21 | 934790 | 2.00% | 1041 |
| chr22 | 2237701 | 4.40% | 2165 |
| chrX | 816962 | 0.52% | 1090 |
| 3342 contigs with no values (186262290 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90135 | 220 | 15334 | 904.09 | 688 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF817RUV.bed.gz | 1.84 MB | 645783b72e2e3eaf92fe19f1592a08e2 |
| ENCFF817RUV.tabix.bed.gz | 911.84 KB | 31cca81ef3b3676b916f5ad549744fb5 |
| ENCFF817RUV.tabix.bed.gz.tbi | 159.24 KB | 90fb1ff33974416f2c83d7a288e5d4ff |
| genomic_resource.yaml | 2.04 KB | fc5e9828af7043600d1eb564e0cccb12 |
| statistics/ |