Resource

Id Histone_ChIP-seq/ENCSR047AFYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR047AFY [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR047AFY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0003013/
  • biosample_summary: Homo sapiens placental basal plate tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:59.522343+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR047AFY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR047AFY float

Histone_ChIP-seq_ENCSR047AFY
Histone_ChIP-seq ENCSR047AFY [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR047AFY [1.83, 26.7]
n
16,280,446
mean
4.98
sd
1.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162804460.51% 28824
chr1 1596194 0.64% 2941
chr2 934532 0.39% 1691
chr3 321333 0.16% 640
chr4 794314 0.42% 1222
chr5 680666 0.37% 1171
chr6 466506 0.27% 894
chr7 871504 0.55% 1460
chr8 577515 0.40% 1058
chr9 855247 0.62% 1424
chr10 916921 0.69% 1600
chr11 909980 0.67% 1604
chr12 702871 0.53% 1190
chr13 289406 0.25% 509
chr14 424256 0.40% 760
chr15 288931 0.28% 579
chr16 797458 0.88% 1353
chr17 1000459 1.20% 1733
chr18 242138 0.30% 482
chr19 1057418 1.80% 1774
chr20 982576 1.52% 1597
chr21 258885 0.55% 483
chr22 688444 1.35% 1240
chrX 622892 0.40% 1419
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28824 155 5472 564.82 458
global segment-length histogram

Files

Filename Size md5
ENCFF467JWA.bed.gz 537.28 KB fefb475540b7f18d0829bade0666875a
ENCFF467JWA.tabix.bed.gz 281.55 KB f38cea65002740f82ec915da357cc874
ENCFF467JWA.tabix.bed.gz.tbi 96.75 KB 403a0e23165d23fd5adcfa390bbbafb7
genomic_resource.yaml 2.05 KB 56f293ae6b3569f2d73158c0a4482807
statistics/