Resource
| Id | Histone_ChIP-seq/ENCSR043SJS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR043SJS [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN913CGU|/analyses/ENCAN913CGU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF159RTQ|/files/ENCFF159RTQ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF159RTQ|/files/ENCFF159RTQ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.12. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF150WVO|/files/ENCFF150WVO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.96. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR043SJS | float |
Histone_ChIP-seq_ENCSR043SJS |
Histone_ChIP-seq ENCSR043SJS [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K9me3"]
|
 |
[1.6, 10.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7010860 | 0.22% | 9597 |
| chr1 | 394856 | 0.16% | 596 |
| chr2 | 414546 | 0.17% | 661 |
| chr3 | 342458 | 0.17% | 537 |
| chr4 | 357173 | 0.19% | 556 |
| chr5 | 326947 | 0.18% | 524 |
| chr6 | 247157 | 0.14% | 413 |
| chr7 | 380927 | 0.24% | 532 |
| chr8 | 260681 | 0.18% | 418 |
| chr9 | 255920 | 0.18% | 380 |
| chr10 | 275577 | 0.21% | 378 |
| chr11 | 207526 | 0.15% | 348 |
| chr12 | 361932 | 0.27% | 479 |
| chr13 | 123086 | 0.11% | 211 |
| chr14 | 155562 | 0.15% | 255 |
| chr15 | 182789 | 0.18% | 238 |
| chr16 | 260677 | 0.29% | 349 |
| chr17 | 159972 | 0.19% | 205 |
| chr18 | 112014 | 0.14% | 189 |
| chr19 | 1848175 | 3.15% | 1831 |
| chr20 | 79657 | 0.12% | 126 |
| chr21 | 108019 | 0.23% | 142 |
| chr22 | 66808 | 0.13% | 98 |
| chrX | 58541 | 0.04% | 91 |
| chrY | 29860 | 0.05% | 40 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 9597 | 225 | 25508 | 730.53 | 558 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF235OJE.bed.gz | 205.68 KB | fb67421f4d421e0c5a9872389665ddf3 |
| ENCFF235OJE.tabix.bed.gz | 101.82 KB | 2a8eb55981448999fc6188eb9d40e204 |
| ENCFF235OJE.tabix.bed.gz.tbi | 63.72 KB | bf2b09b41ee06383605a1e68414c4bf1 |
| genomic_resource.yaml | 3.45 KB | d90d4c507304e1d920ef1826350ba787 |
| statistics/ |