Resource
| Id | Histone_ChIP-seq/ENCSR039CNL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR039CNL [biosample_summary="Homo sapiens BLaER1 168 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 168 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR039CNL | float |
Histone_ChIP-seq_ENCSR039CNL |
Histone_ChIP-seq ENCSR039CNL [biosample_summary="Homo sapiens BLaER1 168 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H4K20me1"]
|
 |
[1.2, 12.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44894905 | 1.40% | 67948 |
| chr1 | 3778658 | 1.52% | 5571 |
| chr1_KI270709v1_random | 829 | 1.24% | 3 |
| chr1_KI270710v1_random | 452 | 1.13% | 1 |
| chr2 | 3120165 | 1.29% | 4901 |
| chr3 | 2600805 | 1.31% | 4217 |
| chr3_GL000221v1_random | 718 | 0.46% | 2 |
| chr4 | 1848503 | 0.97% | 3133 |
| chr4_GL000008v2_random | 272 | 0.13% | 1 |
| chr5 | 2669647 | 1.47% | 4256 |
| chr5_GL000208v1_random | 543 | 0.59% | 2 |
| chr6 | 2174935 | 1.27% | 3368 |
| chr7 | 2463965 | 1.55% | 3690 |
| chr8 | 3081592 | 2.12% | 4511 |
| chr9 | 1680783 | 1.21% | 2710 |
| chr10 | 2186782 | 1.63% | 3416 |
| chr11 | 2353823 | 1.74% | 3216 |
| chr12 | 2058790 | 1.54% | 3089 |
| chr13 | 910353 | 0.80% | 1611 |
| chr14 | 1385544 | 1.29% | 2240 |
| chr14_GL000009v2_random | 964 | 0.48% | 3 |
| chr14_GL000225v1_random | 448 | 0.21% | 1 |
| chr14_KI270725v1_random | 638 | 0.37% | 2 |
| chr15 | 1569614 | 1.54% | 2497 |
| chr16 | 2218335 | 2.46% | 2767 |
| chr17 | 2299808 | 2.76% | 3182 |
| chr17_GL000205v2_random | 250 | 0.13% | 1 |
| chr18 | 700952 | 0.87% | 1252 |
| chr19 | 1749506 | 2.98% | 2160 |
| chr20 | 1360754 | 2.11% | 1893 |
| chr21 | 671067 | 1.44% | 916 |
| chr22 | 1204794 | 2.37% | 1615 |
| chr22_KI270735v1_random | 259 | 0.60% | 1 |
| chrUn_GL000216v2 | 468 | 0.26% | 1 |
| chrUn_GL000219v1 | 3236 | 1.81% | 8 |
| chrUn_GL000220v1 | 539 | 0.33% | 1 |
| chrUn_GL000224v1 | 261 | 0.15% | 1 |
| chrUn_KI270304v1 | 513 | 23.70% | 2 |
| chrUn_KI270333v1 | 1572 | 58.24% | 3 |
| chrUn_KI270337v1 | 501 | 44.69% | 1 |
| chrUn_KI270411v1 | 1474 | 55.71% | 1 |
| chrUn_KI270412v1 | 533 | 45.21% | 2 |
| chrUn_KI270422v1 | 453 | 31.35% | 1 |
| chrUn_KI270435v1 | 338 | 0.36% | 1 |
| chrUn_KI270438v1 | 3115 | 2.77% | 7 |
| chrUn_KI270442v1 | 1683 | 0.43% | 5 |
| chrUn_KI270465v1 | 520 | 29.31% | 1 |
| chrUn_KI270466v1 | 428 | 34.71% | 1 |
| chrUn_KI270467v1 | 624 | 15.92% | 2 |
| chrUn_KI270519v1 | 250 | 0.18% | 1 |
| chrUn_KI270544v1 | 843 | 70.13% | 2 |
| chrUn_KI270583v1 | 254 | 18.14% | 1 |
| chrUn_KI270590v1 | 256 | 5.46% | 1 |
| chrUn_KI270591v1 | 325 | 5.61% | 1 |
| chrUn_KI270742v1 | 269 | 0.14% | 1 |
| chrUn_KI270744v1 | 311 | 0.18% | 1 |
| chrUn_KI270746v1 | 311 | 0.47% | 1 |
| chrUn_KI270747v1 | 253 | 0.13% | 1 |
| chrUn_KI270749v1 | 342 | 0.22% | 1 |
| chrUn_KI270756v1 | 293 | 0.37% | 1 |
| chrUn_KI270757v1 | 856 | 1.20% | 2 |
| chrX | 779119 | 0.50% | 1667 |
| chrY | 417 | <0.01% | 1 |
| 3304 contigs with no values (125303887 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67948 | 250 | 86699 | 660.72 | 378 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF027MYT.bed.gz | 1.22 MB | 306038fa16e09100d2295e362fdd9dbe |
| ENCFF027MYT.tabix.bed.gz | 644.62 KB | 161c0daed4cf75957461ea2e2aa51d89 |
| ENCFF027MYT.tabix.bed.gz.tbi | 172.87 KB | 087a9285ee07f5ce92cf6318fb8ecd26 |
| genomic_resource.yaml | 3.13 KB | 9ed49c45803b3e30b786862ac124a0f8 |
| statistics/ |