Resource
| Id | Histone_ChIP-seq/ENCSR038GYF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR038GYF [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN999UOW|/analyses/ENCAN999UOW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF194ZUF|/files/ENCFF194ZUF/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 5660635 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF054SPC|/files/ENCFF054SPC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 8182835 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR038GYF | float |
Histone_ChIP-seq_ENCSR038GYF |
Histone_ChIP-seq ENCSR038GYF [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K27me3"]
|
 |
[2.17, 9.76] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9179947 | 0.29% | 24597 |
| chr1 | 726266 | 0.29% | 2003 |
| chr2 | 716178 | 0.30% | 1831 |
| chr3 | 408449 | 0.21% | 1126 |
| chr4 | 456198 | 0.24% | 1143 |
| chr5 | 705508 | 0.39% | 1749 |
| chr6 | 939312 | 0.55% | 2309 |
| chr7 | 453817 | 0.28% | 1133 |
| chr8 | 451776 | 0.31% | 1243 |
| chr9 | 377565 | 0.27% | 1066 |
| chr10 | 501174 | 0.37% | 1352 |
| chr11 | 518885 | 0.38% | 1439 |
| chr12 | 469634 | 0.35% | 1300 |
| chr13 | 265519 | 0.23% | 667 |
| chr14 | 379113 | 0.35% | 962 |
| chr15 | 384092 | 0.38% | 1053 |
| chr16 | 206066 | 0.23% | 608 |
| chr17 | 256049 | 0.31% | 726 |
| chr18 | 224366 | 0.28% | 632 |
| chr19 | 157321 | 0.27% | 463 |
| chr20 | 306363 | 0.48% | 865 |
| chr21 | 57235 | 0.12% | 171 |
| chr22 | 93812 | 0.18% | 302 |
| chrX | 125249 | 0.08% | 454 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24597 | 155 | 3307 | 373.21 | 282 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF616AIT.bed.gz | 403.07 KB | d3b60ee22eafdf60fd2589b5a51f52ca |
| ENCFF616AIT.tabix.bed.gz | 225.8 KB | 22589b42293cff915da6f51acc9e460a |
| ENCFF616AIT.tabix.bed.gz.tbi | 99.27 KB | fc8d189fa06940b8b3704e62c233fcca |
| genomic_resource.yaml | 2.58 KB | 243f36d9bedc072c6d4d11ae0f507d15 |
| statistics/ |