Resource
| Id | Histone_ChIP-seq/ENCSR036HAT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR036HAT [biosample_summary="Homo sapiens spinal cord tissue female embryo (113 days)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN114PPO|/analyses/ENCAN114PPO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF740KTL|/files/ENCFF740KTL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16869993 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR036HAT | float |
Histone_ChIP-seq_ENCSR036HAT |
Histone_ChIP-seq ENCSR036HAT [biosample_summary="Homo sapiens spinal cord tissue female embryo (113 days)" and target="H3K4me3"]
|
 |
[1.78, 118] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37814975 | 1.18% | 29506 |
| chr1 | 3659298 | 1.47% | 2854 |
| chr2 | 2622606 | 1.08% | 2008 |
| chr3 | 2255072 | 1.14% | 1633 |
| chr4 | 1619193 | 0.85% | 1171 |
| chr5 | 1911491 | 1.05% | 1354 |
| chr6 | 2293633 | 1.34% | 1687 |
| chr7 | 1871426 | 1.17% | 1444 |
| chr8 | 1438217 | 0.99% | 1117 |
| chr9 | 1497474 | 1.08% | 1205 |
| chr10 | 1578440 | 1.18% | 1258 |
| chr11 | 2076899 | 1.54% | 1580 |
| chr12 | 2099357 | 1.58% | 1525 |
| chr13 | 860162 | 0.75% | 648 |
| chr14 | 1191580 | 1.11% | 899 |
| chr15 | 1212891 | 1.19% | 964 |
| chr16 | 1353009 | 1.50% | 1178 |
| chr17 | 2166353 | 2.60% | 1728 |
| chr18 | 693423 | 0.86% | 567 |
| chr19 | 2182397 | 3.72% | 1914 |
| chr20 | 923295 | 1.43% | 781 |
| chr21 | 364384 | 0.78% | 303 |
| chr22 | 755883 | 1.49% | 707 |
| chrX | 1187897 | 0.76% | 980 |
| chrY | 595 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29506 | 176 | 31274 | 1281.6 | 1007.5 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF852RVK.bed.gz | 726.14 KB | ab252681dfa2f151363efe227d9fbcd4 |
| ENCFF852RVK.tabix.bed.gz | 326.15 KB | 37051fd3b94d9cbdc5ef21ac19cbc30b |
| ENCFF852RVK.tabix.bed.gz.tbi | 156.84 KB | ed767005a7c8dcc23da0553fc64a8faa |
| genomic_resource.yaml | 1.99 KB | 8030d561c9b881e7a15701afa844ec75 |
| statistics/ |