Resource
| Id | Histone_ChIP-seq/ENCSR035DUS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR035DUS [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN072UNJ|/analyses/ENCAN072UNJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF282KEX|/files/ENCFF282KEX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24340214 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF181GEM|/files/ENCFF181GEM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23471944 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR035DUS | float |
Histone_ChIP-seq_ENCSR035DUS |
Histone_ChIP-seq ENCSR035DUS [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me1"]
|
 |
[1.58, 16.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 69854288 | 2.17% | 168625 |
| chr1 | 7278758 | 2.92% | 16723 |
| chr1_KI270713v1_random | 249 | 0.61% | 1 |
| chr2 | 5538559 | 2.29% | 13866 |
| chr3 | 4191360 | 2.11% | 10584 |
| chr4 | 2520768 | 1.33% | 7052 |
| chr5 | 3636268 | 2.00% | 9303 |
| chr6 | 3602062 | 2.11% | 9455 |
| chr7 | 3181852 | 2.00% | 8068 |
| chr8 | 3110009 | 2.14% | 7853 |
| chr9 | 3330491 | 2.41% | 7731 |
| chr10 | 3746176 | 2.80% | 8962 |
| chr11 | 4114606 | 3.05% | 9349 |
| chr12 | 3140043 | 2.36% | 7686 |
| chr13 | 1655189 | 1.45% | 4470 |
| chr14 | 2257102 | 2.11% | 5337 |
| chr15 | 2452543 | 2.40% | 5721 |
| chr16 | 2628267 | 2.91% | 5763 |
| chr17 | 3626099 | 4.36% | 7650 |
| chr18 | 1574664 | 1.96% | 4154 |
| chr19 | 2375431 | 4.05% | 5093 |
| chr20 | 2127808 | 3.30% | 4845 |
| chr21 | 765961 | 1.64% | 1797 |
| chr22 | 1670083 | 3.29% | 3511 |
| chr22_KI270733v1_random | 269 | 0.15% | 1 |
| chrUn_GL000195v1 | 170 | 0.09% | 1 |
| chrX | 1285816 | 0.82% | 3521 |
| chrY | 43685 | 0.08% | 128 |
| 3339 contigs with no values (128673672 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 168625 | 125 | 6276 | 414.26 | 325 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF399YHU.bed.gz | 3.63 MB | d1ba50a5d787536af1ac6dd3992c2201 |
| ENCFF399YHU.tabix.bed.gz | 1.67 MB | 1007e1981b093b83f2053d75089c00b5 |
| ENCFF399YHU.tabix.bed.gz.tbi | 423.07 KB | e3224e7f911a3fe26b83a12d6da40dd0 |
| genomic_resource.yaml | 2.45 KB | df42dd38fc374a2c3381115a3e113aac |
| statistics/ |