Resource
| Id | Histone_ChIP-seq/ENCSR034ZKE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR034ZKE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN571JOP|/analyses/ENCAN571JOP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF422CZO|/files/ENCFF422CZO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF422CZO|/files/ENCFF422CZO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.59. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR034ZKE | float |
Histone_ChIP-seq_ENCSR034ZKE |
Histone_ChIP-seq ENCSR034ZKE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27ac"]
|
 |
[1.25, 75.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 119991228 | 3.73% | 107024 |
| chr1 | 12509392 | 5.02% | 10607 |
| chr1_KI270713v1_random | 1096 | 2.69% | 2 |
| chr2 | 9143552 | 3.78% | 8538 |
| chr3 | 7468942 | 3.77% | 6885 |
| chr4 | 4119505 | 2.17% | 4163 |
| chr5 | 5994622 | 3.30% | 5692 |
| chr6 | 6195711 | 3.63% | 5935 |
| chr7 | 5143014 | 3.23% | 4831 |
| chr8 | 5037233 | 3.47% | 4664 |
| chr9 | 5226410 | 3.78% | 4693 |
| chr10 | 6120508 | 4.57% | 5547 |
| chr11 | 7013708 | 5.19% | 5766 |
| chr12 | 6216290 | 4.66% | 5452 |
| chr13 | 2330598 | 2.04% | 2377 |
| chr14 | 4137156 | 3.86% | 3514 |
| chr15 | 4214111 | 4.13% | 3733 |
| chr16 | 4302527 | 4.76% | 3820 |
| chr17 | 6884437 | 8.27% | 5251 |
| chr17_GL000205v2_random | 939 | 0.51% | 2 |
| chr18 | 2334071 | 2.90% | 2403 |
| chr19 | 5218623 | 8.90% | 4001 |
| chr20 | 3451002 | 5.36% | 3017 |
| chr21 | 1588497 | 3.40% | 1479 |
| chr22 | 3185498 | 6.27% | 2460 |
| chrUn_GL000195v1 | 934 | 0.51% | 2 |
| chrUn_GL000218v1 | 217 | 0.13% | 1 |
| chrUn_GL000219v1 | 2021 | 1.13% | 2 |
| chrUn_GL000220v1 | 199 | 0.12% | 1 |
| chrX | 2150415 | 1.38% | 2186 |
| 3337 contigs with no values (185393121 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107024 | 190 | 51148 | 1121.16 | 736 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF190SES.bed.gz | 2.46 MB | 460d4684c9f2423349e63fd827560af0 |
| ENCFF190SES.tabix.bed.gz | 1.11 MB | 910d74a3050ad8ae9d3419eedebbd49c |
| ENCFF190SES.tabix.bed.gz.tbi | 283.58 KB | c45ac0d76bcd451029ed7a8d2e45745a |
| genomic_resource.yaml | 2.78 KB | 411c550149badeb131726a9d8ca5977c |
| statistics/ |