Resource
| Id | Histone_ChIP-seq/ENCSR034ZHF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR034ZHF [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN139GFO|/analyses/ENCAN139GFO/} has in progress subobject document {3d3d5534-1cc5-42ca-9cd6-4d715a21caa4|/documents/3d3d5534-1cc5-42ca-9cd6-4d715a21caa4/} audit_internal_action: Released analysis {ENCAN139GFO|/analyses/ENCAN139GFO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF712DVG|/files/ENCFF712DVG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16902182 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR034ZHF | float |
Histone_ChIP-seq_ENCSR034ZHF |
Histone_ChIP-seq ENCSR034ZHF [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K36me3"]
|
 |
[1.96, 57.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43258013 | 1.34% | 94767 |
| chr1 | 4111846 | 1.65% | 9391 |
| chr2 | 2516658 | 1.04% | 6245 |
| chr3 | 2184233 | 1.10% | 5170 |
| chr4 | 1330530 | 0.70% | 3168 |
| chr5 | 1540254 | 0.85% | 3757 |
| chr6 | 1606984 | 0.94% | 3823 |
| chr7 | 1998393 | 1.25% | 4468 |
| chr8 | 1341958 | 0.92% | 3186 |
| chr9 | 2119501 | 1.53% | 4476 |
| chr10 | 1718757 | 1.28% | 4185 |
| chr11 | 2418901 | 1.79% | 5002 |
| chr12 | 2257394 | 1.69% | 4928 |
| chr13 | 593522 | 0.52% | 1563 |
| chr14 | 1320371 | 1.23% | 3139 |
| chr15 | 1338463 | 1.31% | 3179 |
| chr16 | 2737983 | 3.03% | 5393 |
| chr17 | 3105270 | 3.73% | 6214 |
| chr18 | 566570 | 0.70% | 1482 |
| chr19 | 3870935 | 6.60% | 6769 |
| chr20 | 1592501 | 2.47% | 3347 |
| chr21 | 646070 | 1.38% | 1357 |
| chr22 | 1814567 | 3.57% | 3397 |
| chrX | 507400 | 0.33% | 1077 |
| chrY | 18952 | 0.03% | 51 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 94767 | 140 | 13852 | 456.47 | 342 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF882FKD.bed.gz | 1.87 MB | 1b254a3dca9992df7d5764412f863457 |
| ENCFF882FKD.tabix.bed.gz | 927.37 KB | 47c83e49379b25c4be5a7618da62cda7 |
| ENCFF882FKD.tabix.bed.gz.tbi | 184.91 KB | 36e76935d9e7e6df73b0251cfbca1a34 |
| genomic_resource.yaml | 2.2 KB | 47e19a85ff65ac3e0cd1bf9d7454ba7d |
| statistics/ |