Resource
| Id | Histone_ChIP-seq/ENCSR034BEQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR034BEQ [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN392XNX|/analyses/ENCAN392XNX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN392XNX|/analyses/ENCAN392XNX/} has in progress subobject document {6c9816ef-978e-435b-a9a6-343d18c80d43|/documents/6c9816ef-978e-435b-a9a6-343d18c80d43/} audit_not_compliant: Processed alignments file {ENCFF980ZRR|/files/ENCFF980ZRR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 17368711 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF641URR|/files/ENCFF641URR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 36852263 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR034BEQ | float |
Histone_ChIP-seq_ENCSR034BEQ |
Histone_ChIP-seq ENCSR034BEQ [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K36me3"]
|
 |
[1.7, 7.84] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3314606 | 0.10% | 6201 |
| chr1 | 283918 | 0.11% | 574 |
| chr2 | 230672 | 0.10% | 477 |
| chr3 | 187173 | 0.09% | 375 |
| chr4 | 138517 | 0.07% | 268 |
| chr5 | 176154 | 0.10% | 351 |
| chr6 | 127320 | 0.07% | 255 |
| chr7 | 151132 | 0.09% | 281 |
| chr8 | 105042 | 0.07% | 220 |
| chr9 | 129160 | 0.09% | 252 |
| chr10 | 123133 | 0.09% | 245 |
| chr11 | 128363 | 0.10% | 261 |
| chr12 | 187243 | 0.14% | 333 |
| chr13 | 49725 | 0.04% | 106 |
| chr14 | 93786 | 0.09% | 190 |
| chr15 | 108989 | 0.11% | 217 |
| chr16 | 123229 | 0.14% | 217 |
| chr17 | 138491 | 0.17% | 278 |
| chr18 | 52677 | 0.07% | 109 |
| chr19 | 590799 | 1.01% | 797 |
| chr20 | 72907 | 0.11% | 146 |
| chr21 | 28528 | 0.06% | 57 |
| chr22 | 51294 | 0.10% | 100 |
| chrX | 36354 | 0.02% | 92 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 6201 | 198 | 4186 | 534.53 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF980QVG.bed.gz | 123.99 KB | 62009c712041340475437d303ec3b1b1 |
| ENCFF980QVG.tabix.bed.gz | 64.16 KB | c5b7a402492e99be1d81d8f2c990d4c3 |
| ENCFF980QVG.tabix.bed.gz.tbi | 47.82 KB | e1572304b190c87889b2efe081280bc5 |
| genomic_resource.yaml | 2.67 KB | bdb9f2c65ccf8739d70c0198ef8a6ccc |
| statistics/ |