Resource

Id Histone_ChIP-seq/ENCSR030NGBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR030NGB [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR030NGB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004648/
  • biosample_summary: Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)
  • date_created: 2017-12-06T21:09:25.606356+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR030NGB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR030NGB float

Histone_ChIP-seq_ENCSR030NGB
Histone_ChIP-seq ENCSR030NGB [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR030NGB [1.31, 10.1]
n
29,187,439
mean
3.95
sd
1.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 291874390.91% 25254
chr1 1867973 0.75% 1810
chr1_KI270709v1_random 6237 9.33% 3
chr2 1882826 0.78% 1926
chr2_KI270716v1_random 5211 3.39% 6
chr3 1546367 0.78% 1586
chr4 1605678 0.84% 1545
chr4_GL000008v2_random 4376 2.09% 1
chr5 2214902 1.22% 1831
chr5_GL000208v1_random 1513 1.63% 2
chr6 1342507 0.79% 1345
chr7 1905430 1.20% 1561
chr8 1445399 1.00% 1380
chr9 1001577 0.72% 928
chr9_KI270719v1_random 2118 1.20% 3
chr10 1623955 1.21% 1381
chr11 1583136 1.17% 1241
chr12 1683963 1.26% 1379
chr13 637765 0.56% 697
chr14 782336 0.73% 782
chr14_GL000194v1_random 577 0.30% 1
chr14_GL000225v1_random 6206 2.94% 8
chr14_KI270722v1_random 6361 3.28% 6
chr14_KI270724v1_random 525 1.33% 1
chr15 720315 0.71% 636
chr16 903342 1.00% 807
chr17 555080 0.67% 506
chr17_GL000205v2_random 5595 3.01% 6
chr17_KI270729v1_random 62317 22.19% 48
chr17_KI270730v1_random 14076 12.51% 13
chr18 524481 0.65% 527
chr19 3354512 5.72% 1613
chr20 571856 0.89% 581
chr21 459209 0.98% 356
chr22 356771 0.70% 327
chr22_KI270732v1_random 2464 5.93% 2
chr22_KI270733v1_random 2585 1.44% 5
chr22_KI270735v1_random 4462 10.42% 4
chr22_KI270736v1_random 63323 34.81% 49
chr22_KI270738v1_random 12037 12.11% 13
chrM 7678 46.34% 2
chrUn_GL000214v1 566 0.41% 1
chrUn_GL000216v2 55822 31.61% 31
chrUn_GL000218v1 1005 0.62% 2
chrUn_GL000219v1 7768 4.33% 5
chrUn_GL000224v1 987 0.55% 1
chrUn_KI270429v1 628 46.14% 1
chrUn_KI270435v1 8221 8.84% 8
chrUn_KI270438v1 29436 26.16% 28
chrUn_KI270442v1 110223 28.11% 64
chrUn_KI270467v1 1626 41.48% 1
chrUn_KI270507v1 758 14.16% 1
chrUn_KI270508v1 517 26.50% 1
chrUn_KI270512v1 3217 14.18% 2
chrUn_KI270515v1 826 12.99% 1
chrUn_KI270517v1 1105 33.97% 1
chrUn_KI270519v1 22378 16.20% 23
chrUn_KI270538v1 1611 1.76% 3
chrUn_KI270588v1 973 15.80% 1
chrUn_KI270589v1 3394 7.63% 2
chrUn_KI270590v1 1712 36.54% 1
chrUn_KI270591v1 3250 56.07% 2
chrUn_KI270744v1 2474 1.47% 3
chrUn_KI270746v1 1110 1.67% 2
chrUn_KI270749v1 2344 1.48% 2
chrUn_KI270751v1 2200 1.46% 2
chrUn_KI270756v1 2278 2.86% 3
chrUn_KI270757v1 7113 9.98% 7
chrX 103602 0.07% 110
chrY 33254 0.06% 27
3297 contigs with no values (124137316 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25254 270 41274 1155.76 869
global segment-length histogram

Files

Filename Size md5
ENCFF454NIK.bed.gz 523.96 KB da2406edc35a72aa2d87f918a6546bce
ENCFF454NIK.tabix.bed.gz 266.1 KB da9376d9f8106f20b668e7c91f8cd199
ENCFF454NIK.tabix.bed.gz.tbi 151.62 KB 9dc36a20da544b91166c759016c3d8e7
genomic_resource.yaml 1.55 KB b4cb9835865260e0d93edfb8d0b637c2
statistics/