Resource

Id Histone_ChIP-seq/ENCSR029TTWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR029TTW [biosample_summary="Homo sapiens ovary tissue female adult (53 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR029TTW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (53 years)
  • date_created: 2017-07-28T10:08:49.979250+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR029TTW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR029TTW float

Histone_ChIP-seq_ENCSR029TTW
Histone_ChIP-seq ENCSR029TTW [biosample_summary="Homo sapiens ovary tissue female adult (53 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR029TTW [1.45, 4.99]
n
330,172
mean
3.03
sd
0.437

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3301720.01% 1746
chr1 20762 0.01% 115
chr2 20730 0.01% 120
chr3 19984 0.01% 108
chr4 14000 0.01% 71
chr5 14951 0.01% 85
chr6 11308 0.01% 66
chr7 16608 0.01% 90
chr8 9950 0.01% 61
chr9 10189 0.01% 58
chr10 11740 0.01% 71
chr11 13018 0.01% 71
chr12 15529 0.01% 80
chr13 6275 0.01% 40
chr14 8602 0.01% 48
chr15 10411 0.01% 53
chr16 13636 0.02% 74
chr17 12513 0.02% 70
chr17_GL000205v2_random 207 0.11% 1
chr18 5007 0.01% 28
chr19 69648 0.12% 296
chr20 6636 0.01% 36
chr21 4958 0.01% 26
chr22 5447 0.01% 29
chrM 772 4.66% 2
chrUn_GL000218v1 145 0.09% 1
chrUn_KI270538v1 181 0.20% 1
chrUn_KI270757v1 195 0.27% 1
chrX 6655 <0.01% 43
chrY 115 <0.01% 1
3337 contigs with no values (128551218 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 1746 115 794 189.1 168
global segment-length histogram

Files

Filename Size md5
ENCFF703MHR.bed.gz 30.13 KB 03e6f0738e75a093ef20606233d8b40f
ENCFF703MHR.tabix.bed.gz 17.34 KB acdcd0e0d32713d9a4a927b35031d229
ENCFF703MHR.tabix.bed.gz.tbi 21.06 KB 03f25b340ee7d6cbd1c84831d694be5e
genomic_resource.yaml 1.49 KB 22e99808ce0cdb34bb280f903dd88e46
statistics/