Resource

Id Histone_ChIP-seq/ENCSR029BVTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR029BVT [biosample_summary="Homo sapiens BLaER1 168 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR029BVT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 168 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:44.787804+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR029BVT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 168 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR029BVT float

Histone_ChIP-seq_ENCSR029BVT
Histone_ChIP-seq ENCSR029BVT [biosample_summary="Homo sapiens BLaER1 168 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR029BVT [1.29, 22]
n
177,026,726
mean
5.13
sd
2.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1770267265.50% 235078
chr1 11610311 4.66% 15551
chr1_KI270706v1_random 20263 11.58% 33
chr1_KI270707v1_random 5449 17.01% 11
chr1_KI270708v1_random 53608 41.99% 62
chr1_KI270709v1_random 20545 30.73% 20
chr1_KI270710v1_random 2875 7.16% 6
chr1_KI270712v1_random 4532 2.57% 3
chr1_KI270713v1_random 956 2.35% 2
chr1_KI270714v1_random 2580 6.18% 3
chr2 12842672 5.30% 17803
chr2_KI270715v1_random 1125 0.70% 4
chr2_KI270716v1_random 11096 7.21% 7
chr3 10009215 5.05% 14526
chr3_GL000221v1_random 6258 4.03% 15
chr4 10121895 5.32% 14373
chr4_GL000008v2_random 13074 6.23% 15
chr5 10711774 5.90% 14656
chr5_GL000208v1_random 6627 7.15% 12
chr6 8503625 4.98% 12313
chr7 11045356 6.93% 13581
chr8 10738660 7.40% 13825
chr9 6275115 4.53% 8618
chr9_KI270719v1_random 7880 4.46% 12
chr9_KI270720v1_random 1105 2.83% 3
chr10 7896480 5.90% 10359
chr11 6727968 4.98% 8975
chr12 7815211 5.86% 9960
chr13 5460554 4.77% 8346
chr14 4909669 4.59% 6747
chr14_GL000009v2_random 12350 6.12% 25
chr14_GL000194v1_random 12987 6.78% 16
chr14_GL000225v1_random 131747 62.39% 128
chr14_KI270722v1_random 45971 23.69% 63
chr14_KI270723v1_random 6247 16.39% 6
chr14_KI270724v1_random 6874 17.38% 8
chr14_KI270725v1_random 6794 3.93% 11
chr15 4294061 4.21% 5853
chr15_KI270727v1_random 520 0.12% 2
chr16 4508988 4.99% 5422
chr16_KI270728v1_random 51333 2.74% 77
chr17 3413756 4.10% 4123
chr17_GL000205v2_random 4120 2.22% 8
chr17_KI270729v1_random 208450 74.22% 33
chr17_KI270730v1_random 33157 29.46% 19
chr18 3841725 4.78% 5551
chr19 9751811 16.64% 6673
chr20 3253815 5.05% 4378
chr21 2571265 5.50% 3309
chr22 1747632 3.44% 2203
chr22_KI270731v1_random 801 0.53% 2
chr22_KI270732v1_random 4158 10.01% 5
chr22_KI270733v1_random 19174 10.67% 35
chr22_KI270735v1_random 6151 14.37% 5
chr22_KI270736v1_random 148269 81.50% 40
chr22_KI270737v1_random 67763 65.26% 48
chr22_KI270738v1_random 58493 58.86% 18
chr22_KI270739v1_random 251 0.34% 1
chrUn_GL000195v1 1437 0.79% 4
chrUn_GL000213v1 4259 2.59% 11
chrUn_GL000214v1 15644 11.36% 29
chrUn_GL000216v2 123195 69.76% 55
chrUn_GL000218v1 6310 3.92% 14
chrUn_GL000219v1 12905 7.20% 21
chrUn_GL000220v1 6478 4.00% 13
chrUn_GL000224v1 119719 66.62% 64
chrUn_KI270304v1 338 15.61% 1
chrUn_KI270317v1 260 0.69% 1
chrUn_KI270320v1 1333 30.19% 3
chrUn_KI270322v1 2125 9.89% 7
chrUn_KI270330v1 398 24.09% 1
chrUn_KI270334v1 319 23.32% 1
chrUn_KI270418v1 781 36.41% 2
chrUn_KI270420v1 364 15.68% 1
chrUn_KI270422v1 729 50.45% 1
chrUn_KI270435v1 16122 17.34% 33
chrUn_KI270438v1 65466 58.19% 25
chrUn_KI270442v1 142695 36.40% 80
chrUn_KI270448v1 1075 13.45% 2
chrUn_KI270465v1 1205 67.93% 3
chrUn_KI270468v1 1776 43.80% 3
chrUn_KI270508v1 1379 70.68% 2
chrUn_KI270512v1 7643 33.69% 12
chrUn_KI270515v1 283 4.45% 1
chrUn_KI270518v1 250 11.44% 1
chrUn_KI270519v1 27708 20.06% 41
chrUn_KI270521v1 272 3.56% 1
chrUn_KI270522v1 404 7.12% 1
chrUn_KI270529v1 691 36.39% 2
chrUn_KI270538v1 4171 4.57% 9
chrUn_KI270539v1 299 30.11% 1
chrUn_KI270548v1 657 41.09% 1
chrUn_KI270580v1 714 45.98% 2
chrUn_KI270582v1 684 10.52% 2
chrUn_KI270584v1 390 8.64% 1
chrUn_KI270588v1 824 13.38% 2
chrUn_KI270589v1 4024 9.05% 4
chrUn_KI270590v1 1557 33.23% 2
chrUn_KI270591v1 1004 17.32% 1
chrUn_KI270741v1 6648 4.22% 11
chrUn_KI270742v1 5381 2.88% 12
chrUn_KI270743v1 12060 5.72% 25
chrUn_KI270744v1 25904 15.38% 33
chrUn_KI270745v1 250 0.60% 1
chrUn_KI270746v1 983 1.48% 3
chrUn_KI270747v1 4912 2.47% 11
chrUn_KI270749v1 4351 2.74% 6
chrUn_KI270750v1 2156 1.45% 4
chrUn_KI270751v1 13338 8.85% 25
chrUn_KI270753v1 7908 12.56% 13
chrUn_KI270754v1 18859 46.92% 18
chrUn_KI270755v1 1254 3.41% 3
chrUn_KI270756v1 77246 97.05% 17
chrUn_KI270757v1 8472 11.89% 13
chrX 16952986 10.86% 26110
chrY 270990 0.47% 409
3251 contigs with no values (118402024 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 235078 250 100721 753.06 457
global segment-length histogram

Files

Filename Size md5
ENCFF793XVH.bed.gz 4.5 MB 39e73877d8ab685dd9664196c3f2ac27
ENCFF793XVH.tabix.bed.gz 2.23 MB 6a4b69765115090fe5857e7cad5b6508
ENCFF793XVH.tabix.bed.gz.tbi 549.94 KB afe696f89df2fc16fd895ea78226cba9
genomic_resource.yaml 3.12 KB 6df6a35d7e44649fb9471ba2bd9ee3d0
statistics/