Resource

Id Histone_ChIP-seq/ENCSR028QEAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR028QEA [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR028QEA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:55.675800+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR028QEA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR028QEA float

Histone_ChIP-seq_ENCSR028QEA
Histone_ChIP-seq ENCSR028QEA [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR028QEA [1.82, 33.8]
n
117,097,049
mean
8.4
sd
4.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1170970493.64% 84912
chr1 12306282 4.94% 8596
chr2 8782490 3.63% 6448
chr3 7333148 3.70% 5379
chr4 4282482 2.25% 3380
chr5 5804238 3.20% 4271
chr6 7076138 4.14% 5227
chr7 6138779 3.85% 4531
chr8 4852368 3.34% 3543
chr9 5425788 3.92% 3936
chr10 5523434 4.13% 4029
chr11 6293462 4.66% 4348
chr12 5659853 4.25% 4208
chr13 2463847 2.15% 1925
chr14 4328791 4.04% 2910
chr15 3723787 3.65% 2793
chr16 4060161 4.49% 2787
chr17 5627850 6.76% 3967
chr18 1868182 2.32% 1540
chr19 5599326 9.55% 3695
chr20 3406970 5.29% 2364
chr21 1362299 2.92% 1055
chr22 2839835 5.59% 1831
chrX 2239048 1.43% 2045
chrY 98491 0.17% 104
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84912 220 29625 1379.04 888
global segment-length histogram

Files

Filename Size md5
ENCFF874GTL.bed.gz 1.91 MB c8281feab86b154d40747f0265152245
ENCFF874GTL.tabix.bed.gz 900.26 KB 25545572b72a4cba37aa686302d287dc
ENCFF874GTL.tabix.bed.gz.tbi 216.71 KB 799158eb64d4d1b77d5e0365f9edad6f
genomic_resource.yaml 1.47 KB d0f30405232261d820996bc4425ee90e
statistics/