Resource

Id Histone_ChIP-seq/ENCSR025CGRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR025CGR [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR025CGR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)
  • date_created: 2017-01-24T04:31:40.865880+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR025CGR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR025CGR float

Histone_ChIP-seq_ENCSR025CGR
Histone_ChIP-seq ENCSR025CGR [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR025CGR [1.37, 7.77]
n
689,571
mean
3.39
sd
0.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 6895710.02% 3453
chr1 25348 0.01% 150
chr1_KI270709v1_random 904 1.35% 3
chr2 25934 0.01% 163
chr2_KI270716v1_random 152 0.10% 1
chr3 25149 0.01% 151
chr4 37627 0.02% 193
chr4_GL000008v2_random 3170 1.51% 6
chr5 46271 0.03% 237
chr6 14493 0.01% 89
chr7 31874 0.02% 170
chr8 17668 0.01% 104
chr9 18283 0.01% 107
chr9_KI270719v1_random 152 0.09% 1
chr10 28714 0.02% 154
chr11 21146 0.02% 128
chr12 41167 0.03% 195
chr13 8109 0.01% 53
chr14 8327 0.01% 52
chr14_GL000225v1_random 1953 0.92% 11
chr14_KI270722v1_random 159 0.08% 1
chr14_KI270724v1_random 127 0.32% 1
chr15 21821 0.02% 90
chr16 20311 0.02% 104
chr16_KI270728v1_random 112 0.01% 1
chr17 8820 0.01% 49
chr17_GL000205v2_random 253 0.14% 1
chr17_KI270729v1_random 2388 0.85% 9
chr17_KI270730v1_random 872 0.77% 3
chr18 7655 0.01% 48
chr19 182355 0.31% 738
chr20 18322 0.03% 79
chr21 20064 0.04% 95
chr22 8006 0.02% 43
chr22_KI270732v1_random 426 1.03% 3
chr22_KI270733v1_random 125 0.07% 1
chr22_KI270735v1_random 800 1.87% 2
chr22_KI270736v1_random 2807 1.54% 13
chrUn_GL000216v2 1121 0.63% 4
chrUn_GL000218v1 169 0.10% 1
chrUn_GL000219v1 489 0.27% 2
chrUn_GL000224v1 2170 1.21% 8
chrUn_KI270435v1 353 0.38% 2
chrUn_KI270438v1 444 0.39% 3
chrUn_KI270442v1 4223 1.08% 20
chrUn_KI270507v1 115 2.15% 1
chrUn_KI270511v1 100 1.23% 1
chrUn_KI270512v1 153 0.67% 1
chrUn_KI270516v1 161 12.38% 1
chrUn_KI270519v1 147 0.11% 1
chrUn_KI270589v1 734 1.65% 2
chrUn_KI270590v1 383 8.18% 1
chrUn_KI270742v1 143 0.08% 1
chrUn_KI270744v1 249 0.15% 2
chrUn_KI270750v1 294 0.20% 1
chrUn_KI270751v1 236 0.16% 1
chrUn_KI270754v1 253 0.63% 2
chrUn_KI270757v1 284 0.40% 2
chrX 22076 0.01% 132
chrY 3410 0.01% 15
3307 contigs with no values (122842114 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3453 100 1592 199.7 166
global segment-length histogram

Files

Filename Size md5
ENCFF491UYW.bed.gz 60.42 KB be3613fc04970c12dbafc024173ec336
ENCFF491UYW.tabix.bed.gz 33.14 KB 723fc6d518552788829c26ff964b6237
ENCFF491UYW.tabix.bed.gz.tbi 29.34 KB 5264bf64026c227c427067dda5f41a50
genomic_resource.yaml 1.56 KB 646d2c3cfa8314f3ffbb60ac44b9ed7d
statistics/