Resource

Id Histone_ChIP-seq/ENCSR016JFPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR016JFP [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR016JFP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years)
  • date_created: 2021-08-25T18:07:06.214460+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR016JFP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (88 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR016JFP float

Histone_ChIP-seq_ENCSR016JFP
Histone_ChIP-seq ENCSR016JFP [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR016JFP [1.64, 8.11]
n
8,579,498
mean
3.82
sd
0.987

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85794980.27% 13779
chr1 418663 0.17% 572
chr2 483373 0.20% 564
chr3 158516 0.08% 217
chr4 329078 0.17% 387
chr5 381112 0.21% 435
chr6 526117 0.31% 649
chr7 460497 0.29% 500
chr8 243627 0.17% 312
chr9 221002 0.16% 273
chr10 371151 0.28% 462
chr11 191712 0.14% 266
chr12 318522 0.24% 392
chr13 168781 0.15% 227
chr14 274557 0.26% 374
chr15 208394 0.20% 306
chr16 205821 0.23% 308
chr17 398260 0.48% 497
chr18 123373 0.15% 174
chr19 184680 0.32% 322
chr20 179991 0.28% 252
chr21 106790 0.23% 157
chr22 65379 0.13% 122
chrX 2560102 1.64% 6011
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13779 195 11402 622.65 438
global segment-length histogram

Files

Filename Size md5
ENCFF552CDI.bed.gz 243.75 KB 4cf4686ab40d1504ad56d4d1e5559fdc
ENCFF552CDI.tabix.bed.gz 132.04 KB 294bf8a0578cffc0fb522a1237f11962
ENCFF552CDI.tabix.bed.gz.tbi 62.12 KB a3ca04f1fa29a0e1b2274aac6be2d504
genomic_resource.yaml 1.71 KB cfe095516f4c22dca38fee8503e301d6
statistics/