Resource
| Id | Histone_ChIP-seq/ENCSR014BTW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR014BTW [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN219HSO|/analyses/ENCAN219HSO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF978SKI|/files/ENCFF978SKI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 33597619 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR014BTW | float |
Histone_ChIP-seq_ENCSR014BTW |
Histone_ChIP-seq ENCSR014BTW [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me1"]
|
 |
[1.9, 15.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 101277403 | 3.15% | 169663 |
| chr1 | 10919165 | 4.39% | 17102 |
| chr1_KI270713v1_random | 1729 | 4.24% | 6 |
| chr1_KI270714v1_random | 219 | 0.52% | 1 |
| chr2 | 8248468 | 3.41% | 13985 |
| chr3 | 6472640 | 3.26% | 11147 |
| chr4 | 4033923 | 2.12% | 7770 |
| chr5 | 5238330 | 2.89% | 9132 |
| chr6 | 5612316 | 3.29% | 10038 |
| chr7 | 4523412 | 2.84% | 8113 |
| chr8 | 4358460 | 3.00% | 7474 |
| chr9 | 4604343 | 3.33% | 7534 |
| chr10 | 5022829 | 3.75% | 8353 |
| chr11 | 5694798 | 4.22% | 9071 |
| chr12 | 5020360 | 3.77% | 8543 |
| chr13 | 2062671 | 1.80% | 3915 |
| chr14 | 3294810 | 3.08% | 5430 |
| chr15 | 3672527 | 3.60% | 6000 |
| chr16 | 3623645 | 4.01% | 5520 |
| chr17 | 5304450 | 6.37% | 7983 |
| chr17_GL000205v2_random | 4507 | 2.43% | 7 |
| chr18 | 2129462 | 2.65% | 3880 |
| chr19 | 3563885 | 6.08% | 5575 |
| chr20 | 2970858 | 4.61% | 4807 |
| chr21 | 1252572 | 2.68% | 2058 |
| chr22 | 2631669 | 5.18% | 3719 |
| chrUn_GL000195v1 | 1864 | 1.02% | 3 |
| chrX | 965530 | 0.62% | 2371 |
| chrY | 47961 | 0.08% | 126 |
| 3338 contigs with no values (128626136 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 169663 | 170 | 15733 | 596.93 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF687JXS.bed.gz | 3.17 MB | 83a28478d9481d78d4d07bd5bc4031dc |
| ENCFF687JXS.tabix.bed.gz | 1.63 MB | be1a389d3ba7d43faeac1c12caa3c8a8 |
| ENCFF687JXS.tabix.bed.gz.tbi | 405.95 KB | f4f3bdad9d3220d6044e0e2819d69ac3 |
| genomic_resource.yaml | 1.96 KB | 2765b39b7467f6839667a052c4b5b2f7 |
| statistics/ |