Resource
| Id | Histone_ChIP-seq/ENCSR012PII |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR012PII [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN619ADQ|/analyses/ENCAN619ADQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF452ZIB|/files/ENCFF452ZIB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19174928 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF452ZIB|/files/ENCFF452ZIB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR012PII | float |
Histone_ChIP-seq_ENCSR012PII |
Histone_ChIP-seq ENCSR012PII [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27ac"]
|
 |
[1.86, 149] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41690922 | 1.30% | 44803 |
| chr1 | 3951022 | 1.59% | 4214 |
| chr2 | 3013407 | 1.24% | 3376 |
| chr3 | 2393561 | 1.21% | 2652 |
| chr4 | 1283552 | 0.67% | 1505 |
| chr5 | 1840341 | 1.01% | 1995 |
| chr6 | 2281687 | 1.34% | 2581 |
| chr7 | 1726079 | 1.08% | 1970 |
| chr8 | 1482825 | 1.02% | 1688 |
| chr9 | 1708691 | 1.23% | 1800 |
| chr10 | 1968491 | 1.47% | 2085 |
| chr11 | 2276817 | 1.69% | 2340 |
| chr12 | 2251781 | 1.69% | 2423 |
| chr13 | 726580 | 0.64% | 881 |
| chr14 | 1417938 | 1.32% | 1496 |
| chr15 | 1444417 | 1.42% | 1573 |
| chr16 | 1758634 | 1.95% | 1835 |
| chr17 | 2569410 | 3.09% | 2506 |
| chr18 | 680066 | 0.85% | 802 |
| chr19 | 2612195 | 4.46% | 2520 |
| chr20 | 1394782 | 2.16% | 1400 |
| chr21 | 596252 | 1.28% | 642 |
| chr22 | 1133160 | 2.23% | 1117 |
| chrX | 1138643 | 0.73% | 1351 |
| chrY | 40591 | 0.07% | 51 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44803 | 205 | 18145 | 930.54 | 623 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF706YSV.bed.gz | 1.13 MB | e046449f8657faee7d5baf86e8be9e28 |
| ENCFF706YSV.tabix.bed.gz | 497.11 KB | 646f9585a398792b8cc41aea7a9bb6f5 |
| ENCFF706YSV.tabix.bed.gz.tbi | 166.16 KB | 001270355b403fd75e400e53c40097fa |
| genomic_resource.yaml | 2.63 KB | a7245535b4043ad410550b135ee0ef41 |
| statistics/ |