Resource

Id Histone_ChIP-seq/ENCSR012KZWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR012KZW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR012KZW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0006920/
  • biosample_summary: Homo sapiens esophagus squamous epithelium tissue male adult (54 years)
  • date_created: 2018-05-11T18:46:22.045218+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR012KZW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR012KZW float

Histone_ChIP-seq_ENCSR012KZW
Histone_ChIP-seq ENCSR012KZW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR012KZW [1.25, 42.3]
n
31,963,081
mean
17.4
sd
8.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 319630810.99% 20067
chr1 3229401 1.30% 2019
chr2 2174603 0.90% 1331
chr3 1786882 0.90% 1104
chr4 1260366 0.66% 752
chr5 1500442 0.83% 889
chr6 1843293 1.08% 1112
chr7 1521221 0.95% 987
chr8 1166548 0.80% 729
chr9 1324749 0.96% 830
chr10 1328007 0.99% 818
chr11 1744355 1.29% 1063
chr12 1685219 1.26% 1043
chr13 643336 0.56% 395
chr14 1065624 1.00% 642
chr15 1044937 1.02% 644
chr16 1269593 1.41% 800
chr17 1929845 2.32% 1219
chr18 534067 0.66% 329
chr19 2087380 3.56% 1477
chr20 820227 1.27% 526
chr21 350367 0.75% 208
chr22 725018 1.43% 491
chrX 888291 0.57% 636
chrY 39310 0.07% 23
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20067 255 12072 1592.82 1457
global segment-length histogram

Files

Filename Size md5
ENCFF979POM.bed.gz 578.9 KB 96ca426e7249b4e422b81fccd9803c7c
ENCFF979POM.tabix.bed.gz 238.79 KB ab7c4784733ca8fb43901fad4d7a9094
ENCFF979POM.tabix.bed.gz.tbi 138.0 KB 6179ea925461604aa3866be2174335a8
genomic_resource.yaml 1.56 KB 12cd0bccceb619a4357244283e5b6cc1
statistics/