Resource
| Id | Histone_ChIP-seq/ENCSR011IVX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR011IVX [biosample_summary="Homo sapiens angular gyrus tissue female adult (75 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN426MFM|/analyses/ENCAN426MFM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF018UIY|/files/ENCFF018UIY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 32242263 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR011IVX | float |
Histone_ChIP-seq_ENCSR011IVX |
Histone_ChIP-seq ENCSR011IVX [biosample_summary="Homo sapiens angular gyrus tissue female adult (75 years)" and target="H3K36me3"]
|
 |
[1.78, 17.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39341579 | 1.22% | 82424 |
| chr1 | 4103224 | 1.65% | 8447 |
| chr2 | 2551737 | 1.05% | 5759 |
| chr3 | 2262482 | 1.14% | 4923 |
| chr4 | 1151162 | 0.61% | 2695 |
| chr5 | 1588189 | 0.87% | 3540 |
| chr6 | 1533891 | 0.90% | 3492 |
| chr7 | 1640197 | 1.03% | 3633 |
| chr8 | 1071469 | 0.74% | 2499 |
| chr9 | 1851180 | 1.34% | 3758 |
| chr10 | 1476714 | 1.10% | 3356 |
| chr11 | 2190270 | 1.62% | 4481 |
| chr12 | 2255947 | 1.69% | 4526 |
| chr13 | 590923 | 0.52% | 1445 |
| chr14 | 1250101 | 1.17% | 2757 |
| chr15 | 1435857 | 1.41% | 3163 |
| chr16 | 2196471 | 2.43% | 4179 |
| chr17 | 2697773 | 3.24% | 5339 |
| chr18 | 476052 | 0.59% | 1136 |
| chr19 | 3070781 | 5.24% | 5578 |
| chr20 | 1450386 | 2.25% | 2904 |
| chr21 | 503636 | 1.08% | 1036 |
| chr22 | 1418045 | 2.79% | 2580 |
| chrX | 575092 | 0.37% | 1198 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82424 | 160 | 6432 | 477.31 | 376 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF609DHQ.bed.gz | 1.55 MB | 8cf7a6e62213cc78d4f5690802821cd7 |
| ENCFF609DHQ.tabix.bed.gz | 799.31 KB | 3710cb3c46b3fede64a15d133bf850fa |
| ENCFF609DHQ.tabix.bed.gz.tbi | 170.27 KB | c3a818fc064c8f428f9ddb41b81cea02 |
| genomic_resource.yaml | 2.02 KB | a59e22148ab60b2e9f0a21086c933c59 |
| statistics/ |