Resource

Id Histone_ChIP-seq/ENCSR010HNYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR010HNY [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR010HNY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:54:24.639385+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR010HNY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR010HNY float

Histone_ChIP-seq_ENCSR010HNY
Histone_ChIP-seq ENCSR010HNY [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR010HNY [1.59, 13.3]
n
63,000,668
mean
4.4
sd
1.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 630006681.96% 85845
chr1 2653235 1.07% 3673
chr2 2298838 0.95% 3059
chr3 866039 0.44% 1216
chr4 1186853 0.62% 1376
chr5 1654595 0.91% 2045
chr6 2012025 1.18% 2252
chr7 1634217 1.03% 1939
chr8 1301342 0.90% 1811
chr9 1119878 0.81% 1412
chr10 2022631 1.51% 2772
chr11 1202403 0.89% 1737
chr12 1598607 1.20% 1943
chr13 761500 0.67% 996
chr14 1498815 1.40% 1926
chr15 1180618 1.16% 1735
chr16 1570768 1.74% 2284
chr17 2002825 2.41% 2343
chr18 662193 0.82% 1010
chr19 1802688 3.08% 2352
chr20 1447693 2.25% 2051
chr21 598890 1.28% 849
chr22 733223 1.44% 1180
chrX 31190792 19.99% 43884
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85845 195 36279 733.89 514
global segment-length histogram

Files

Filename Size md5
ENCFF051WDV.bed.gz 1.52 MB 124690408cce112a82020603aa29f06b
ENCFF051WDV.tabix.bed.gz 808.45 KB c8a54879595741c1a65cfc65fddf6e1a
ENCFF051WDV.tabix.bed.gz.tbi 171.39 KB 5648ca65db243e9fa4e691cb1cad55bd
genomic_resource.yaml 1.75 KB 815673e60f0274ce39098c5aa688294d
statistics/