Resource
| Id | Histone_ChIP-seq/ENCSR004ZWW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR004ZWW [biosample_summary="Homo sapiens IMR-90" and target="H4K8ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN230ETW|/analyses/ENCAN230ETW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF654MZS|/files/ENCFF654MZS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12090077 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K8ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF143LAT|/files/ENCFF143LAT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11480082 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K8ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR004ZWW | float |
Histone_ChIP-seq_ENCSR004ZWW |
Histone_ChIP-seq ENCSR004ZWW [biosample_summary="Homo sapiens IMR-90" and target="H4K8ac"]
|
 |
[1.65, 31.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32518615 | 1.01% | 103155 |
| chr1 | 2963285 | 1.19% | 9234 |
| chr2 | 2928958 | 1.21% | 9224 |
| chr3 | 2089277 | 1.05% | 6657 |
| chr4 | 1333370 | 0.70% | 4715 |
| chr5 | 1955643 | 1.08% | 6158 |
| chr6 | 1877011 | 1.10% | 6256 |
| chr7 | 1516185 | 0.95% | 5050 |
| chr8 | 1491221 | 1.03% | 4918 |
| chr9 | 1466216 | 1.06% | 4593 |
| chr10 | 1409907 | 1.05% | 4511 |
| chr11 | 1982420 | 1.47% | 6021 |
| chr12 | 1663561 | 1.25% | 5278 |
| chr13 | 789405 | 0.69% | 2685 |
| chr14 | 1003411 | 0.94% | 3128 |
| chr15 | 1254003 | 1.23% | 3774 |
| chr16 | 1057539 | 1.17% | 3175 |
| chr17 | 1605907 | 1.93% | 4680 |
| chr18 | 631336 | 0.79% | 2160 |
| chr19 | 1099449 | 1.88% | 3393 |
| chr20 | 829921 | 1.29% | 2483 |
| chr21 | 451746 | 0.97% | 1456 |
| chr22 | 624138 | 1.23% | 1843 |
| chrX | 494706 | 0.32% | 1763 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 103155 | 105 | 3602 | 315.24 | 245 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF939CLZ.bed.gz | 2.38 MB | 357c36222ec35382c0949bdb1fa40c45 |
| ENCFF939CLZ.tabix.bed.gz | 1.04 MB | 9364ffac10a49b8fad970d833f8da643 |
| ENCFF939CLZ.tabix.bed.gz.tbi | 258.0 KB | 0c49fbe8549315e6ab35fefcb3a36f04 |
| genomic_resource.yaml | 2.35 KB | ab94ca7f127bb09934ff9f1d48d4da84 |
| statistics/ |