Resource

Id Histone_ChIP-seq/ENCSR002EZNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR002EZN [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR002EZN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000594/
  • biosample_summary: Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell
  • date_created: 2015-09-15T19:48:41.279640+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR002EZN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult
  • status: released
  • submitter_comment: Experiment 4f4439bf-c50e-4acb-a6a1-5342321fb3b0 merged into base. Experiment 9ae4211d-e048-45bb-8216-43422ca4bf5d merged into base.
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR002EZN float

Histone_ChIP-seq_ENCSR002EZN
Histone_ChIP-seq ENCSR002EZN [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR002EZN [1.52, 56]
n
91,697,499
mean
13.5
sd
8.96

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 916974992.85% 95456
chr1 8573542 3.44% 8680
chr1_KI270713v1_random 478 1.17% 2
chr2 7405581 3.06% 8047
chr3 5823266 2.94% 6261
chr4 4431046 2.33% 4850
chr5 4936842 2.72% 5318
chr6 5721268 3.35% 5945
chr7 4502721 2.83% 4964
chr8 3962363 2.73% 4342
chr9 3953423 2.86% 4133
chr10 4270830 3.19% 4522
chr11 4727075 3.50% 4637
chr12 4881170 3.66% 4881
chr13 2451762 2.14% 2740
chr14 2910196 2.72% 2952
chr14_GL000194v1_random 192 0.10% 1
chr15 3051814 2.99% 3179
chr16 3005036 3.33% 2963
chr17 4460271 5.36% 4354
chr17_GL000205v2_random 2462 1.33% 2
chr18 1763072 2.19% 1954
chr19 3662894 6.25% 3271
chr20 2141114 3.32% 2263
chr21 1055837 2.26% 1141
chr22 1717762 3.38% 1672
chrUn_GL000195v1 1651 0.90% 3
chrUn_GL000219v1 4653 2.60% 6
chrUn_GL000220v1 324 0.20% 1
chrX 2278854 1.46% 2372
3337 contigs with no values (185362799 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95456 180 32382 960.63 629
global segment-length histogram

Files

Filename Size md5
ENCFF668XQY.bed.gz 2.49 MB 856062123748ea3af280226f7597255a
ENCFF668XQY.tabix.bed.gz 1.04 MB 9cd78053a698ea46f896d58059853ce0
ENCFF668XQY.tabix.bed.gz.tbi 341.37 KB 96c0b107b8598d7662b02c01a9ba2b2a
genomic_resource.yaml 2.21 KB 9ff2c7c6217611afe72f28902e98af1e
statistics/