Resource

Id Histone_ChIP-seq/ENCSR000XAAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000XAA [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR000XAA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue female adult (53 years)
  • date_created: 2016-10-19T23:04:05.554552+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR000XAA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000XAA float

Histone_ChIP-seq_ENCSR000XAA
Histone_ChIP-seq ENCSR000XAA [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000XAA [1.75, 25.4]
n
58,291,569
mean
4.95
sd
2.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 582915691.81% 51490
chr1 3504864 1.41% 3418
chr1_KI270709v1_random 11791 17.64% 14
chr2 3894400 1.61% 3872
chr2_KI270716v1_random 7797 5.07% 4
chr3 3134542 1.58% 3179
chr4 3434466 1.81% 3435
chr4_GL000008v2_random 4981 2.38% 2
chr5 4013798 2.21% 3428
chr5_GL000208v1_random 6106 6.59% 8
chr6 2837420 1.66% 2871
chr7 3757363 2.36% 3042
chr8 2868632 1.98% 2619
chr9 1952817 1.41% 1814
chr9_KI270719v1_random 2836 1.60% 4
chr10 2887883 2.16% 2362
chr11 2665154 1.97% 2141
chr12 2820471 2.12% 2304
chr13 1481878 1.30% 1572
chr14 1550251 1.45% 1521
chr14_GL000009v2_random 442 0.22% 1
chr14_GL000194v1_random 1016 0.53% 1
chr14_GL000225v1_random 27831 13.18% 33
chr14_KI270722v1_random 10278 5.30% 10
chr14_KI270723v1_random 431 1.13% 1
chr15 1285851 1.26% 1186
chr16 1645133 1.82% 1353
chr17 998250 1.20% 910
chr17_GL000205v2_random 4158 2.24% 5
chr17_KI270729v1_random 110045 39.18% 51
chr17_KI270730v1_random 22523 20.01% 11
chr18 1106516 1.38% 1112
chr19 4779981 8.15% 2100
chr20 1129210 1.75% 1094
chr21 756475 1.62% 675
chr22 541392 1.07% 529
chr22_KI270732v1_random 3635 8.75% 4
chr22_KI270733v1_random 10477 5.83% 17
chr22_KI270735v1_random 4933 11.52% 4
chr22_KI270736v1_random 114408 62.89% 39
chr22_KI270737v1_random 2669 2.57% 3
chr22_KI270738v1_random 49508 49.82% 23
chrM 13977 84.36% 6
chrUn_GL000214v1 405 0.29% 1
chrUn_GL000216v2 68098 38.56% 28
chrUn_GL000218v1 528 0.33% 1
chrUn_GL000219v1 5821 3.25% 7
chrUn_GL000220v1 1055 0.65% 3
chrUn_GL000224v1 16439 9.15% 13
chrUn_KI270333v1 1041 38.57% 2
chrUn_KI270337v1 693 61.82% 1
chrUn_KI270429v1 691 50.77% 1
chrUn_KI270435v1 10533 11.33% 10
chrUn_KI270438v1 46354 41.20% 42
chrUn_KI270442v1 139453 35.57% 71
chrUn_KI270448v1 672 8.41% 1
chrUn_KI270465v1 450 25.37% 1
chrUn_KI270466v1 1019 82.64% 1
chrUn_KI270467v1 2470 63.01% 2
chrUn_KI270468v1 1560 38.47% 1
chrUn_KI270507v1 1327 24.79% 1
chrUn_KI270509v1 681 29.38% 1
chrUn_KI270512v1 4781 21.07% 2
chrUn_KI270515v1 2283 35.89% 3
chrUn_KI270516v1 1036 79.69% 1
chrUn_KI270517v1 1117 34.34% 1
chrUn_KI270518v1 946 43.28% 1
chrUn_KI270519v1 38512 27.88% 40
chrUn_KI270522v1 1552 27.35% 2
chrUn_KI270538v1 8716 9.55% 13
chrUn_KI270583v1 1177 84.07% 1
chrUn_KI270584v1 296 6.56% 1
chrUn_KI270588v1 1459 23.69% 1
chrUn_KI270589v1 3010 6.77% 1
chrUn_KI270590v1 2654 56.65% 3
chrUn_KI270591v1 4574 78.92% 2
chrUn_KI270593v1 1057 34.76% 1
chrUn_KI270744v1 4120 2.45% 3
chrUn_KI270746v1 1860 2.80% 2
chrUn_KI270747v1 1095 0.55% 1
chrUn_KI270749v1 2574 1.62% 2
chrUn_KI270750v1 1182 0.79% 3
chrUn_KI270751v1 3244 2.15% 3
chrUn_KI270754v1 998 2.48% 2
chrUn_KI270756v1 6309 7.93% 5
chrUn_KI270757v1 13187 18.51% 10
chrX 4403620 2.82% 4402
chrY 24331 0.04% 18
3279 contigs with no values (123246276 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51490 230 64910 1132.09 817
global segment-length histogram

Files

Filename Size md5
ENCFF433HZN.bed.gz 1.05 MB cd473fa0475168f1ccde0c8444a03812
ENCFF433HZN.tabix.bed.gz 535.55 KB e4f6b1a575e88a668d0d0b3647c0b61d
ENCFF433HZN.tabix.bed.gz.tbi 264.35 KB 996548b56acb6a8103b80f5b68a655a7
genomic_resource.yaml 1.54 KB a1e5bc090459d5a9f09f2c293dafc640
statistics/