Resource

Id Histone_ChIP-seq/ENCSR000NPFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000NPF [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR000NPF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000746/
  • biosample_summary: Homo sapiens cardiac muscle cell originated from RUES2
  • date_created: 2016-10-18T22:31:55.566766+00:00
  • date_released: 2016-11-12
  • doi: 10.17989/ENCSR000NPF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: embryo
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000NPF float

Histone_ChIP-seq_ENCSR000NPF
Histone_ChIP-seq ENCSR000NPF [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000NPF [1.52, 51.8]
n
99,364,356
mean
7.38
sd
6.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 993643563.09% 86290
chr1 10516129 4.22% 8866
chr1_KI270713v1_random 2827 6.94% 6
chr2 7485937 3.09% 6625
chr3 6322689 3.19% 5614
chr4 4459532 2.34% 3996
chr5 5516708 3.04% 4649
chr6 5320743 3.12% 4761
chr7 4916871 3.09% 4491
chr8 3913094 2.70% 3412
chr9 3847257 2.78% 3425
chr10 5656813 4.23% 4715
chr11 5025273 3.72% 4353
chr11_KI270721v1_random 284 0.28% 1
chr12 5428587 4.07% 4574
chr13 2068580 1.81% 1864
chr14 3080670 2.88% 2644
chr15 3786525 3.71% 3097
chr16 3007543 3.33% 2703
chr17 4887325 5.87% 4127
chr17_GL000205v2_random 394 0.21% 1
chr18 2393491 2.98% 1996
chr19 3402466 5.80% 3037
chr20 2724010 4.23% 2284
chr21 1006864 2.16% 909
chr22 2241686 4.41% 1939
chr22_KI270733v1_random 1330 0.74% 3
chrUn_GL000195v1 1155 0.63% 2
chrX 2349573 1.51% 2196
3338 contigs with no values (185615180 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86290 200 28020 1151.52 782
global segment-length histogram

Files

Filename Size md5
ENCFF287NJM.bed.gz 2.1 MB 67765504f4c7c42ae5d398e13c8a5572
ENCFF287NJM.tabix.bed.gz 943.12 KB e0f8c56e0ec971e5d4cb1cbf28ee0c76
ENCFF287NJM.tabix.bed.gz.tbi 276.22 KB 5fa3ab2332d3e2d50012aa30efed4a0d
genomic_resource.yaml 1.49 KB 8bd6eb7a2cef00e6c5264c5e3fb02768
statistics/