Resource

Id Histone_ChIP-seq/ENCSR000FCUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000FCU [biosample_summary="Homo sapiens SK-N-SH" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR000FCU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003072/
  • biosample_summary: Homo sapiens SK-N-SH
  • date_created: 2013-09-13T15:37:59.483326-08:00
  • date_released: 2014-07-07
  • doi: 10.17989/ENCSR000FCU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000FCU float

Histone_ChIP-seq_ENCSR000FCU
Histone_ChIP-seq ENCSR000FCU [biosample_summary="Homo sapiens SK-N-SH" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000FCU [1.58, 79.8]
n
98,327,474
mean
13.9
sd
10.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 983274743.06% 109149
chr1 10439462 4.19% 11205
chr2 8429576 3.48% 9415
chr3 6668143 3.36% 7519
chr4 4941370 2.60% 5676
chr5 6205412 3.42% 6654
chr6 5617348 3.29% 6196
chr7 6068488 3.81% 6455
chr8 3933984 2.71% 4469
chr9 4109035 2.97% 4598
chr10 4944448 3.70% 5399
chr11 5390681 3.99% 5662
chr12 4807166 3.61% 5384
chr13 2639293 2.31% 3188
chr14 3084095 2.88% 3225
chr15 3069275 3.01% 3512
chr16 2736952 3.03% 3193
chr17 4413853 5.30% 4462
chr18 1956525 2.43% 2227
chr19 2327367 3.97% 2930
chr20 2215778 3.44% 2539
chr21 886197 1.90% 1075
chr22 1693081 3.33% 1863
chrX 1749945 1.12% 2303
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109149 153 43125 900.86 518
global segment-length histogram

Files

Filename Size md5
ENCFF188BQP.bed.gz 2.4 MB 4c953c6729a7a3066f09e6b881691bec
ENCFF188BQP.tabix.bed.gz 1.1 MB 3ff0191a41db2887ca4e2027feefbc0c
ENCFF188BQP.tabix.bed.gz.tbi 307.31 KB 8f7db4cde0dc01451179cac94dd4f44b
genomic_resource.yaml 2.1 KB dde2820d7c7ece082b817e01f19c0180
statistics/