Resource
| Id | Histone_ChIP-seq/ENCSR000FCQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCQ [biosample_summary="Homo sapiens HCT116" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN224EAW|/analyses/ENCAN224EAW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF100UEE|/files/ENCFF100UEE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15540069 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF755AFR|/files/ENCFF755AFR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29207763 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCQ | float |
Histone_ChIP-seq_ENCSR000FCQ |
Histone_ChIP-seq ENCSR000FCQ [biosample_summary="Homo sapiens HCT116" and target="H3K36me3"]
|
 |
[1.75, 10.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50326877 | 1.56% | 98333 |
| chr1 | 5148097 | 2.07% | 9926 |
| chr2 | 3562574 | 1.47% | 7154 |
| chr3 | 2890585 | 1.46% | 5934 |
| chr4 | 1734950 | 0.91% | 3569 |
| chr5 | 2599009 | 1.43% | 5049 |
| chr6 | 2187522 | 1.28% | 4427 |
| chr7 | 2046670 | 1.28% | 4262 |
| chr8 | 2077007 | 1.43% | 3999 |
| chr9 | 1939699 | 1.40% | 3866 |
| chr10 | 2596473 | 1.94% | 4637 |
| chr11 | 2503489 | 1.85% | 4836 |
| chr12 | 2936081 | 2.20% | 5680 |
| chr13 | 991740 | 0.87% | 1984 |
| chr14 | 1885223 | 1.76% | 3734 |
| chr15 | 1884606 | 1.85% | 3817 |
| chr16 | 2343051 | 2.59% | 4390 |
| chr17 | 3684345 | 4.43% | 6603 |
| chr17_GL000205v2_random | 453 | 0.24% | 2 |
| chr17_KI270729v1_random | 197 | 0.07% | 1 |
| chr18 | 772634 | 0.96% | 1647 |
| chr19 | 2288764 | 3.90% | 4606 |
| chr20 | 1702179 | 2.64% | 3207 |
| chr21 | 668589 | 1.43% | 1173 |
| chr22 | 1357310 | 2.67% | 2636 |
| chrUn_GL000195v1 | 316 | 0.17% | 1 |
| chrUn_KI270337v1 | 180 | 16.06% | 1 |
| chrUn_KI270438v1 | 179 | 0.16% | 1 |
| chrUn_KI270466v1 | 603 | 48.91% | 1 |
| chrUn_KI270467v1 | 1874 | 47.81% | 2 |
| chrX | 522240 | 0.33% | 1187 |
| chrY | 238 | <0.01% | 1 |
| 3335 contigs with no values (128308980 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 98333 | 170 | 10500 | 511.8 | 377 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF528ZNP.bed.gz | 1.9 MB | 9236479266cb58c38dfe6da3bb7566ce |
| ENCFF528ZNP.tabix.bed.gz | 966.85 KB | 4b0beaa2146c8b603b1145302963be24 |
| ENCFF528ZNP.tabix.bed.gz.tbi | 136.35 KB | cfec44167a3e7bcb0ef952a127b90147 |
| genomic_resource.yaml | 2.44 KB | b083b1792a2effe3a90532cdb708b2dd |
| statistics/ |