Resource
| Id | Histone_ChIP-seq/ENCSR000FCP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCP [biosample_summary="Homo sapiens HCT116" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN829DUI|/analyses/ENCAN829DUI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN829DUI|/analyses/ENCAN829DUI/} has in progress subobject document {74cb5647-23f1-4e2d-924b-0f9f92f1a038|/documents/74cb5647-23f1-4e2d-924b-0f9f92f1a038/} audit_warning: Processed unfiltered alignments file {ENCFF383RZK|/files/ENCFF383RZK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 37291408 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF027DUB|/files/ENCFF027DUB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36320111 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCP | float |
Histone_ChIP-seq_ENCSR000FCP |
Histone_ChIP-seq ENCSR000FCP [biosample_summary="Homo sapiens HCT116" and target="H3K9me3"]
|
 |
[1.78, 11.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34509422 | 1.07% | 63094 |
| chr1 | 1071019 | 0.43% | 2121 |
| chr2 | 1855746 | 0.77% | 3759 |
| chr3 | 1713825 | 0.86% | 3493 |
| chr4 | 1282844 | 0.67% | 2551 |
| chr5 | 2061216 | 1.14% | 4155 |
| chr6 | 941824 | 0.55% | 1922 |
| chr7 | 1091714 | 0.69% | 2172 |
| chr8 | 6054604 | 4.17% | 9503 |
| chr9 | 1033279 | 0.75% | 2095 |
| chr10 | 2659137 | 1.99% | 4506 |
| chr11 | 1531625 | 1.13% | 3179 |
| chr12 | 777775 | 0.58% | 1463 |
| chr13 | 1184034 | 1.04% | 2397 |
| chr14 | 1251791 | 1.17% | 2456 |
| chr15 | 1003020 | 0.98% | 1821 |
| chr16 | 1531802 | 1.70% | 2622 |
| chr17 | 1538049 | 1.85% | 2163 |
| chr18 | 1715945 | 2.13% | 3476 |
| chr19 | 1587306 | 2.71% | 2513 |
| chr20 | 627789 | 0.97% | 1212 |
| chr21 | 1683537 | 3.60% | 2995 |
| chr22 | 302318 | 0.59% | 498 |
| chrX | 6824 | <0.01% | 17 |
| chrY | 2399 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 63094 | 260 | 23972 | 546.95 | 467 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF158YTR.bed.gz | 1017.66 KB | 928edd5adf5ae87a0ebcad8c1652a7ef |
| ENCFF158YTR.tabix.bed.gz | 557.41 KB | 5ac5f9c5c3e646dbd777f0b934f8430e |
| ENCFF158YTR.tabix.bed.gz.tbi | 173.91 KB | ae319ed107e603b877ac0517f0afbb3e |
| genomic_resource.yaml | 2.66 KB | a66220b98355d90524e2362f2241ba3d |
| statistics/ |