Resource
| Id | Histone_ChIP-seq/ENCSR000FCO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCO [biosample_summary="Homo sapiens Panc1" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN937NPL|/analyses/ENCAN937NPL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN937NPL|/analyses/ENCAN937NPL/} has in progress subobject document {07bf8dcc-b540-40a8-982b-dd8ae7a4803f|/documents/07bf8dcc-b540-40a8-982b-dd8ae7a4803f/} audit_not_compliant: Processed alignments file {ENCFF024XOL|/files/ENCFF024XOL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 23729805 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF192RQW|/files/ENCFF192RQW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 27115496 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCO | float |
Histone_ChIP-seq_ENCSR000FCO |
Histone_ChIP-seq ENCSR000FCO [biosample_summary="Homo sapiens Panc1" and target="H3K27me3"]
|
 |
[1.4, 13.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25732791 | 0.80% | 65988 |
| chr1 | 2481653 | 1.00% | 6652 |
| chr2 | 2149194 | 0.89% | 5844 |
| chr3 | 1760697 | 0.89% | 4369 |
| chr4 | 212594 | 0.11% | 688 |
| chr5 | 1817436 | 1.00% | 4864 |
| chr6 | 2137613 | 1.25% | 5238 |
| chr7 | 2023477 | 1.27% | 5034 |
| chr8 | 700225 | 0.48% | 1897 |
| chr9 | 347086 | 0.25% | 751 |
| chr10 | 2444222 | 1.83% | 5826 |
| chr11 | 2722233 | 2.02% | 6519 |
| chr12 | 1327609 | 1.00% | 3593 |
| chr13 | 124627 | 0.11% | 398 |
| chr14 | 276797 | 0.26% | 894 |
| chr15 | 942270 | 0.92% | 2459 |
| chr16 | 593936 | 0.66% | 1683 |
| chr17 | 909604 | 1.09% | 2222 |
| chr18 | 589978 | 0.73% | 1401 |
| chr19 | 706395 | 1.21% | 1426 |
| chr20 | 936815 | 1.45% | 2608 |
| chr21 | 64912 | 0.14% | 227 |
| chr22 | 87194 | 0.17% | 277 |
| chrX | 376224 | 0.24% | 1118 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65988 | 178 | 9216 | 389.96 | 300 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF394AZZ.bed.gz | 1.2 MB | 691778a849757325e99073168ad20af9 |
| ENCFF394AZZ.tabix.bed.gz | 639.27 KB | f95c11424a11c732ef13db31ceacfd3f |
| ENCFF394AZZ.tabix.bed.gz.tbi | 167.96 KB | 4e096d1a6188e6118b41b220d043366e |
| genomic_resource.yaml | 2.61 KB | 781fb6c8ff95cf096fe45c59428512b8 |
| statistics/ |