Resource
| Id | Histone_ChIP-seq/ENCSR000FCH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCH [biosample_summary="Homo sapiens HEK293" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed alignments file {ENCFF249JEZ|/files/ENCFF249JEZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4888751 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN004AEQ|/analyses/ENCAN004AEQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF452WMV|/files/ENCFF452WMV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12441442 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCH | float |
Histone_ChIP-seq_ENCSR000FCH |
Histone_ChIP-seq ENCSR000FCH [biosample_summary="Homo sapiens HEK293" and target="H3K27ac"]
|
 |
[1.83, 159] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31129471 | 0.97% | 35591 |
| chr1 | 2845291 | 1.14% | 3185 |
| chr2 | 2064022 | 0.85% | 2260 |
| chr3 | 1319472 | 0.67% | 1529 |
| chr4 | 950470 | 0.50% | 1090 |
| chr5 | 1737527 | 0.96% | 1889 |
| chr6 | 1972178 | 1.15% | 2089 |
| chr7 | 1450700 | 0.91% | 1651 |
| chr8 | 897534 | 0.62% | 1022 |
| chr9 | 1102966 | 0.80% | 1272 |
| chr10 | 1535395 | 1.15% | 1664 |
| chr11 | 1121589 | 0.83% | 1378 |
| chr12 | 1664538 | 1.25% | 1812 |
| chr13 | 505314 | 0.44% | 588 |
| chr14 | 1166777 | 1.09% | 1288 |
| chr15 | 1256605 | 1.23% | 1392 |
| chr16 | 1056538 | 1.17% | 1273 |
| chr17 | 2547974 | 3.06% | 2964 |
| chr18 | 697987 | 0.87% | 790 |
| chr19 | 2312763 | 3.95% | 2972 |
| chr20 | 706903 | 1.10% | 871 |
| chr21 | 332820 | 0.71% | 384 |
| chr22 | 867207 | 1.71% | 1095 |
| chrX | 1016901 | 0.65% | 1133 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 35591 | 210 | 17651 | 874.64 | 646 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF668WID.bed.gz | 867.66 KB | 9de2633d9b28665eed5cbec5d6e41ff9 |
| ENCFF668WID.tabix.bed.gz | 388.45 KB | d497d00f567a5d37d82e13844152549c |
| ENCFF668WID.tabix.bed.gz.tbi | 171.01 KB | 4fcff6b9c4730f81fdf3a2960ff0c154 |
| genomic_resource.yaml | 2.35 KB | f4032efa797e2361796ffaeb5166cb7b |
| statistics/ |