Resource
| Id | Histone_ChIP-seq/ENCSR000EXW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EXW [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN658AIG|/analyses/ENCAN658AIG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN658AIG|/analyses/ENCAN658AIG/} has in progress subobject document {91375e2e-a875-46ca-9b36-58edb74567e0|/documents/91375e2e-a875-46ca-9b36-58edb74567e0/} audit_not_compliant: Processed alignments file {ENCFF374RWC|/files/ENCFF374RWC/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 26262378 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF580VZF|/files/ENCFF580VZF/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 32502414 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXW | float |
Histone_ChIP-seq_ENCSR000EXW |
Histone_ChIP-seq ENCSR000EXW [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K27me3"]
|
 |
[1.69, 18.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44636769 | 1.39% | 58338 |
| chr1 | 4384631 | 1.76% | 5872 |
| chr2 | 3707051 | 1.53% | 4814 |
| chr3 | 2220977 | 1.12% | 2924 |
| chr4 | 2131228 | 1.12% | 2644 |
| chr5 | 3078449 | 1.70% | 3730 |
| chr6 | 3725138 | 2.18% | 4468 |
| chr7 | 2271360 | 1.43% | 2803 |
| chr8 | 2125573 | 1.46% | 2688 |
| chr9 | 1929866 | 1.39% | 2696 |
| chr10 | 2311349 | 1.73% | 3053 |
| chr11 | 2290133 | 1.70% | 3203 |
| chr12 | 2192342 | 1.64% | 2833 |
| chr13 | 1328527 | 1.16% | 1594 |
| chr14 | 1539146 | 1.44% | 2106 |
| chr15 | 1652838 | 1.62% | 2245 |
| chr16 | 1014061 | 1.12% | 1374 |
| chr17 | 1832900 | 2.20% | 2317 |
| chr18 | 989119 | 1.23% | 1361 |
| chr19 | 1338790 | 2.28% | 1899 |
| chr20 | 1306084 | 2.03% | 1848 |
| chr21 | 328523 | 0.70% | 446 |
| chr22 | 556560 | 1.10% | 816 |
| chrX | 372811 | 0.24% | 588 |
| chrY | 9313 | 0.02% | 16 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58338 | 213 | 30534 | 765.14 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF550OSB.bed.gz | 1.1 MB | d618d639270d96511ab48fc25a3ab777 |
| ENCFF550OSB.tabix.bed.gz | 573.71 KB | 03543c731a5a74f16f89c0a1b085a925 |
| ENCFF550OSB.tabix.bed.gz.tbi | 168.88 KB | 05629104750675f50a9bdcc1eb1e2f79 |
| genomic_resource.yaml | 2.61 KB | 09b59919ff52c639f8b7f242a20b1e84 |
| statistics/ |