Resource
| Id | Histone_ChIP-seq/ENCSR000EXU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EXU [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN269AUY|/analyses/ENCAN269AUY/} has in progress subobject document {2f73ceb6-bd9d-45b4-a38e-8f8c0112ca1f|/documents/2f73ceb6-bd9d-45b4-a38e-8f8c0112ca1f/} audit_internal_action: Released analysis {ENCAN269AUY|/analyses/ENCAN269AUY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF382MGX|/files/ENCFF382MGX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 43356495 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF186RNJ|/files/ENCFF186RNJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF186RNJ|/files/ENCFF186RNJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXU | float |
Histone_ChIP-seq_ENCSR000EXU |
Histone_ChIP-seq ENCSR000EXU [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K9me3"]
|
 |
[1.52, 19.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31017994 | 0.96% | 31895 |
| chr1 | 2017659 | 0.81% | 2101 |
| chr2 | 2392860 | 0.99% | 2697 |
| chr3 | 2063586 | 1.04% | 2406 |
| chr4 | 2012410 | 1.06% | 2333 |
| chr5 | 2162547 | 1.19% | 2485 |
| chr6 | 1685105 | 0.99% | 1942 |
| chr7 | 1854194 | 1.16% | 1924 |
| chr8 | 1663620 | 1.15% | 1706 |
| chr9 | 1046708 | 0.76% | 1073 |
| chr10 | 1187302 | 0.89% | 1213 |
| chr11 | 1466689 | 1.09% | 1562 |
| chr12 | 1748695 | 1.31% | 1611 |
| chr13 | 1179524 | 1.03% | 1502 |
| chr14 | 880067 | 0.82% | 1018 |
| chr15 | 752914 | 0.74% | 775 |
| chr16 | 816564 | 0.90% | 646 |
| chr17 | 516138 | 0.62% | 425 |
| chr18 | 657152 | 0.82% | 748 |
| chr19 | 3503197 | 5.98% | 2208 |
| chr20 | 371651 | 0.58% | 399 |
| chr21 | 473176 | 1.01% | 590 |
| chr22 | 221492 | 0.44% | 197 |
| chrX | 212836 | 0.14% | 243 |
| chrY | 131908 | 0.23% | 91 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31895 | 345 | 47069 | 972.5 | 707 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF786QDJ.bed.gz | 671.71 KB | 8754ebfbfb17ad26971ba6f03123f980 |
| ENCFF786QDJ.tabix.bed.gz | 334.73 KB | d77873712f6271a306193753666a864e |
| ENCFF786QDJ.tabix.bed.gz.tbi | 174.6 KB | 203b75217392405b80381f241f6ffb42 |
| genomic_resource.yaml | 3.38 KB | 0a0b3503765d50d55ab6d76297276b7f |
| statistics/ |