Resource
| Id | Histone_ChIP-seq/ENCSR000EXK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EXK [biosample_summary="Homo sapiens Panc1" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN382NYS|/analyses/ENCAN382NYS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN382NYS|/analyses/ENCAN382NYS/} has in progress subobject document {ed77eba4-5eab-4d65-8349-b43ec026e34d|/documents/ed77eba4-5eab-4d65-8349-b43ec026e34d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF857ERK|/files/ENCFF857ERK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF857ERK|/files/ENCFF857ERK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.19. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXK | float |
Histone_ChIP-seq_ENCSR000EXK |
Histone_ChIP-seq ENCSR000EXK [biosample_summary="Homo sapiens Panc1" and target="H3K27ac"]
|
 |
[1.45, 46.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 91039554 | 2.83% | 80758 |
| chr1 | 9186921 | 3.69% | 7752 |
| chr2 | 7027908 | 2.90% | 6372 |
| chr3 | 5438476 | 2.74% | 4897 |
| chr4 | 2917761 | 1.53% | 2792 |
| chr5 | 5425900 | 2.99% | 5140 |
| chr6 | 6056362 | 3.55% | 5706 |
| chr7 | 5349090 | 3.36% | 4771 |
| chr8 | 2843701 | 1.96% | 2806 |
| chr9 | 2785751 | 2.01% | 2585 |
| chr10 | 5893604 | 4.40% | 4875 |
| chr11 | 5045610 | 3.74% | 4223 |
| chr12 | 5486672 | 4.12% | 4443 |
| chr13 | 1931943 | 1.69% | 1757 |
| chr14 | 2282445 | 2.13% | 2113 |
| chr15 | 3295930 | 3.23% | 2734 |
| chr16 | 2971922 | 3.29% | 2805 |
| chr17 | 4738321 | 5.69% | 4017 |
| chr18 | 1778728 | 2.21% | 1615 |
| chr19 | 3390827 | 5.78% | 3141 |
| chr20 | 2935235 | 4.55% | 2231 |
| chr21 | 884199 | 1.89% | 807 |
| chr22 | 1606477 | 3.16% | 1444 |
| chrX | 1765771 | 1.13% | 1732 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 80758 | 218 | 101267 | 1127.31 | 623 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF079UIK.bed.gz | 1.75 MB | 94fe92382fb64df64e171156c1a5662d |
| ENCFF079UIK.tabix.bed.gz | 838.93 KB | 3f4aad9996d67f0b2404852c7c266513 |
| ENCFF079UIK.tabix.bed.gz.tbi | 177.54 KB | 29c34acbe6581498a14a2304198295b9 |
| genomic_resource.yaml | 2.9 KB | c2480df67f45102ee5287303b5be2dad |
| statistics/ |