Resource
| Id | Histone_ChIP-seq/ENCSR000EXD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EXD [biosample_summary="Homo sapiens NT2/D1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN494GVJ|/analyses/ENCAN494GVJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN494GVJ|/analyses/ENCAN494GVJ/} has in progress subobject document {aab2dde7-a679-4fb1-b12c-dfa499ce7b11|/documents/aab2dde7-a679-4fb1-b12c-dfa499ce7b11/} audit_warning: Processed alignments file {ENCFF595HXA|/files/ENCFF595HXA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 11633495 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF675KXV|/files/ENCFF675KXV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12489051 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXD | float |
Histone_ChIP-seq_ENCSR000EXD |
Histone_ChIP-seq ENCSR000EXD [biosample_summary="Homo sapiens NT2/D1" and target="H3K4me3"]
|
 |
[1.95, 75.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36426303 | 1.13% | 32013 |
| chr1 | 3731486 | 1.50% | 3045 |
| chr2 | 2456939 | 1.01% | 2109 |
| chr3 | 2040677 | 1.03% | 1582 |
| chr4 | 1400421 | 0.74% | 1193 |
| chr5 | 1657000 | 0.91% | 1468 |
| chr6 | 2072544 | 1.21% | 1795 |
| chr7 | 1710720 | 1.07% | 1580 |
| chr8 | 1347946 | 0.93% | 1173 |
| chr9 | 1547301 | 1.12% | 1300 |
| chr10 | 1438092 | 1.07% | 1330 |
| chr11 | 1939576 | 1.44% | 1676 |
| chr12 | 2005978 | 1.51% | 1567 |
| chr13 | 639235 | 0.56% | 611 |
| chr14 | 1119797 | 1.05% | 1025 |
| chr15 | 1165203 | 1.14% | 1028 |
| chr16 | 1552216 | 1.72% | 1330 |
| chr17 | 2134594 | 2.56% | 1935 |
| chr18 | 588120 | 0.73% | 544 |
| chr19 | 2475626 | 4.22% | 2445 |
| chr20 | 1015284 | 1.58% | 932 |
| chr21 | 374283 | 0.80% | 301 |
| chr22 | 727701 | 1.43% | 781 |
| chrX | 1257276 | 0.81% | 1232 |
| chrY | 28288 | 0.05% | 31 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32013 | 155 | 8560 | 1137.86 | 930 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF954FXD.bed.gz | 769.02 KB | e7c7678cfc765a96a6393513add730c6 |
| ENCFF954FXD.tabix.bed.gz | 349.52 KB | 4b5af4012b288b4b38fd3e28cb3c46aa |
| ENCFF954FXD.tabix.bed.gz.tbi | 157.68 KB | 9be831eda8058eccfbd0c53accb37bcb |
| genomic_resource.yaml | 2.6 KB | 98ded614e2f584d6ffc801b56f50a4dd |
| statistics/ |