Resource
| Id | Histone_ChIP-seq/ENCSR000EXC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EXC [biosample_summary="Homo sapiens NT2/D1" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN423PFP|/analyses/ENCAN423PFP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF144YZK|/files/ENCFF144YZK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11538761 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF493LSP|/files/ENCFF493LSP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12116599 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXC | float |
Histone_ChIP-seq_ENCSR000EXC |
Histone_ChIP-seq ENCSR000EXC [biosample_summary="Homo sapiens NT2/D1" and target="H3K9ac"]
|
 |
[1.64, 49.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47952473 | 1.49% | 78569 |
| chr1 | 5264598 | 2.11% | 8238 |
| chr2 | 2974452 | 1.23% | 4809 |
| chr3 | 2471538 | 1.25% | 3740 |
| chr4 | 1521632 | 0.80% | 2425 |
| chr5 | 1739215 | 0.96% | 2721 |
| chr6 | 2075354 | 1.22% | 3199 |
| chr7 | 2090633 | 1.31% | 3555 |
| chr8 | 1646099 | 1.13% | 2612 |
| chr9 | 2394981 | 1.73% | 4016 |
| chr10 | 1717919 | 1.28% | 2921 |
| chr11 | 2961831 | 2.19% | 4912 |
| chr12 | 2705343 | 2.03% | 4201 |
| chr13 | 621273 | 0.54% | 969 |
| chr14 | 1340547 | 1.25% | 2133 |
| chr15 | 1494112 | 1.46% | 2450 |
| chr16 | 2661836 | 2.95% | 4575 |
| chr17 | 3325684 | 3.99% | 5716 |
| chr18 | 615591 | 0.77% | 1013 |
| chr19 | 3556632 | 6.07% | 6137 |
| chr20 | 1568988 | 2.43% | 2776 |
| chr21 | 720445 | 1.54% | 1204 |
| chr22 | 1211702 | 2.38% | 2285 |
| chrX | 1251157 | 0.80% | 1938 |
| chrY | 20911 | 0.04% | 24 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 78569 | 140 | 7061 | 610.32 | 407 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF304WSW.bed.gz | 1.66 MB | 7f15e7b7bf3bd96eed331f8a281aa463 |
| ENCFF304WSW.tabix.bed.gz | 793.12 KB | bdfc01638a979cfc2194c67feed3451e |
| ENCFF304WSW.tabix.bed.gz.tbi | 225.65 KB | 460687798feb95be48c1dda1c7d9dd29 |
| genomic_resource.yaml | 2.35 KB | 8892bb8d539bf6ff7df4da6c299df4dc |
| statistics/ |