Resource
| Id | Histone_ChIP-seq/ENCSR000EWP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EWP [biosample_summary="Homo sapiens MCF-7" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN754GGE|/analyses/ENCAN754GGE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF440AHS|/files/ENCFF440AHS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27980047 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF195UFT|/files/ENCFF195UFT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 31945684 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EWP | float |
Histone_ChIP-seq_ENCSR000EWP |
Histone_ChIP-seq ENCSR000EWP [biosample_summary="Homo sapiens MCF-7" and target="H3K27me3"]
|
 |
[1.33, 13.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25653443 | 0.80% | 50924 |
| chr1 | 1535816 | 0.62% | 2997 |
| chr2 | 1102646 | 0.46% | 2338 |
| chr3 | 2454761 | 1.24% | 4610 |
| chr4 | 431115 | 0.23% | 1023 |
| chr5 | 1416588 | 0.78% | 2973 |
| chr6 | 1161947 | 0.68% | 2477 |
| chr7 | 2954578 | 1.85% | 5687 |
| chr8 | 1030425 | 0.71% | 2507 |
| chr9 | 969524 | 0.70% | 1907 |
| chr10 | 1418700 | 1.06% | 2791 |
| chr11 | 525485 | 0.39% | 1041 |
| chr12 | 782375 | 0.59% | 1715 |
| chr13 | 482983 | 0.42% | 974 |
| chr14 | 1472903 | 1.38% | 3019 |
| chr15 | 1335686 | 1.31% | 2570 |
| chr16 | 1713112 | 1.90% | 3539 |
| chr17 | 1499839 | 1.80% | 2801 |
| chr18 | 231845 | 0.29% | 583 |
| chr19 | 349655 | 0.60% | 756 |
| chr20 | 1799985 | 2.79% | 2614 |
| chr21 | 279366 | 0.60% | 489 |
| chr22 | 48280 | 0.10% | 119 |
| chrX | 655383 | 0.42% | 1393 |
| chrY | 446 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 50924 | 185 | 14811 | 503.76 | 348 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF831BNS.bed.gz | 987.57 KB | 0b793902cc2ae59bc8558adfa534bc38 |
| ENCFF831BNS.tabix.bed.gz | 501.21 KB | 9630e8b88969aa5030b59dbfcd42a8a9 |
| ENCFF831BNS.tabix.bed.gz.tbi | 115.87 KB | c5d6548f4b2114420a447f54ddae05bc |
| genomic_resource.yaml | 2.37 KB | 85c0b925313ff3a8641a0e73ed83c92c |
| statistics/ |