Resource
| Id | Histone_ChIP-seq/ENCSR000EWB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EWB [biosample_summary="Homo sapiens K562" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN563KAP|/analyses/ENCAN563KAP/} has in progress subobject document {461726f9-f6cc-419a-9b02-ed28c7ad735a|/documents/461726f9-f6cc-419a-9b02-ed28c7ad735a/} audit_internal_action: Released analysis {ENCAN563KAP|/analyses/ENCAN563KAP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF652TXG|/files/ENCFF652TXG/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 12736085 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF508LLH|/files/ENCFF508LLH/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 21061179 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EWB | float |
Histone_ChIP-seq_ENCSR000EWB |
Histone_ChIP-seq ENCSR000EWB [biosample_summary="Homo sapiens K562" and target="H3K27me3"]
|
 |
[1.65, 21.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 138665625 | 4.31% | 145139 |
| chr1 | 16890336 | 6.78% | 16215 |
| chr2 | 11542112 | 4.77% | 12567 |
| chr3 | 5966654 | 3.01% | 6549 |
| chr4 | 4535503 | 2.38% | 5084 |
| chr5 | 7329531 | 4.04% | 7973 |
| chr6 | 9262587 | 5.42% | 10040 |
| chr7 | 9786385 | 6.14% | 9512 |
| chr8 | 6514444 | 4.49% | 7157 |
| chr9 | 5539718 | 4.00% | 5177 |
| chr10 | 7544558 | 5.64% | 8387 |
| chr11 | 7838083 | 5.80% | 7747 |
| chr12 | 5462801 | 4.10% | 5984 |
| chr13 | 1952560 | 1.71% | 2333 |
| chr14 | 2153727 | 2.01% | 2537 |
| chr15 | 5259004 | 5.16% | 5926 |
| chr16 | 6339898 | 7.02% | 6489 |
| chr17 | 6877756 | 8.26% | 6636 |
| chr18 | 2506238 | 3.12% | 3088 |
| chr19 | 3755087 | 6.41% | 4122 |
| chr20 | 4766750 | 7.40% | 4827 |
| chr21 | 2675396 | 5.73% | 2401 |
| chr22 | 2773571 | 5.46% | 2631 |
| chrX | 1392926 | 0.89% | 1757 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 145139 | 298 | 30271 | 955.4 | 693 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF801AHF.bed.gz | 3.04 MB | e2bef555c66ac7cb95dd56dc3339420f |
| ENCFF801AHF.tabix.bed.gz | 1.44 MB | c9bdfa8eac2e2e63677c564fbcae36ad |
| ENCFF801AHF.tabix.bed.gz.tbi | 222.09 KB | b706a92505bf56622c980dce07d1402d |
| genomic_resource.yaml | 2.61 KB | 6ce4ef63783b8d0c0ac3e24ec689f184 |
| statistics/ |