Resource
| Id | Histone_ChIP-seq/ENCSR000DWD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DWD [biosample_summary="Homo sapiens K562" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN080CZM|/analyses/ENCAN080CZM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF915MJO|/files/ENCFF915MJO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13029970 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF367FNL|/files/ENCFF367FNL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11916415 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DWD | float |
Histone_ChIP-seq_ENCSR000DWD |
Histone_ChIP-seq ENCSR000DWD [biosample_summary="Homo sapiens K562" and target="H3K4me3"]
|
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[1.87, 103] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32829626 | 1.02% | 31367 |
| chr1 | 3309941 | 1.33% | 3136 |
| chr2 | 2137992 | 0.88% | 1973 |
| chr3 | 1782816 | 0.90% | 1687 |
| chr4 | 1229564 | 0.65% | 1175 |
| chr5 | 1440599 | 0.79% | 1313 |
| chr6 | 2081016 | 1.22% | 1888 |
| chr7 | 1578447 | 0.99% | 1527 |
| chr8 | 1167466 | 0.80% | 1090 |
| chr9 | 1298788 | 0.94% | 1243 |
| chr10 | 1349494 | 1.01% | 1335 |
| chr11 | 1765918 | 1.31% | 1588 |
| chr12 | 1758165 | 1.32% | 1655 |
| chr13 | 592609 | 0.52% | 612 |
| chr14 | 1021831 | 0.95% | 1027 |
| chr15 | 1021227 | 1.00% | 944 |
| chr16 | 1436656 | 1.59% | 1366 |
| chr17 | 1963998 | 2.36% | 1869 |
| chr18 | 486313 | 0.61% | 465 |
| chr19 | 2416007 | 4.12% | 2439 |
| chr20 | 847089 | 1.31% | 811 |
| chr21 | 358722 | 0.77% | 380 |
| chr22 | 764660 | 1.50% | 784 |
| chrX | 1019000 | 0.65% | 1056 |
| chrY | 1308 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31367 | 140 | 11642 | 1046.63 | 658 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF378OQB.bed.gz | 787.35 KB | 2b003fc1b23f7e9dfefacae891100581 |
| ENCFF378OQB.tabix.bed.gz | 348.22 KB | ed4a9cd525ab9c391d9b9b0c75de266c |
| ENCFF378OQB.tabix.bed.gz.tbi | 141.41 KB | 25abfdad99a8b2727fe3117ec300d7bc |
| genomic_resource.yaml | 2.65 KB | 9d1cf864e91e6f97190045f934e43c03 |
| statistics/ |
