Resource

Id Histone_ChIP-seq/ENCSR000DWDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DWD [biosample_summary="Homo sapiens K562" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR000DWD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2014-02-12T22:47:47.314177+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DWD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 1,1 of this experiment was previously attributed to biosample ENCBS698AAA and replicate 2,1 of this experiment was previously attributed to biosample ENCBS698AAA but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DWD float

Histone_ChIP-seq_ENCSR000DWD

Histone_ChIP-seq ENCSR000DWD [biosample_summary="Homo sapiens K562" and target="H3K4me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DWD [1.87, 103]
n
32,829,626
mean
36.1
sd
21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 328296261.02% 31367
chr1 3309941 1.33% 3136
chr2 2137992 0.88% 1973
chr3 1782816 0.90% 1687
chr4 1229564 0.65% 1175
chr5 1440599 0.79% 1313
chr6 2081016 1.22% 1888
chr7 1578447 0.99% 1527
chr8 1167466 0.80% 1090
chr9 1298788 0.94% 1243
chr10 1349494 1.01% 1335
chr11 1765918 1.31% 1588
chr12 1758165 1.32% 1655
chr13 592609 0.52% 612
chr14 1021831 0.95% 1027
chr15 1021227 1.00% 944
chr16 1436656 1.59% 1366
chr17 1963998 2.36% 1869
chr18 486313 0.61% 465
chr19 2416007 4.12% 2439
chr20 847089 1.31% 811
chr21 358722 0.77% 380
chr22 764660 1.50% 784
chrX 1019000 0.65% 1056
chrY 1308 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31367 140 11642 1046.63 658
global segment-length histogram

Files

Filename Size md5
ENCFF378OQB.bed.gz 787.35 KB 2b003fc1b23f7e9dfefacae891100581
ENCFF378OQB.tabix.bed.gz 348.22 KB ed4a9cd525ab9c391d9b9b0c75de266c
ENCFF378OQB.tabix.bed.gz.tbi 141.41 KB 25abfdad99a8b2727fe3117ec300d7bc
genomic_resource.yaml 2.65 KB 9d1cf864e91e6f97190045f934e43c03
statistics/