Resource
| Id | Histone_ChIP-seq/ENCSR000DVM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DVM [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN141AAW|/analyses/ENCAN141AAW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF055MXS|/files/ENCFF055MXS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13202542 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF471DQY|/files/ENCFF471DQY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12865231 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DVM | float |
Histone_ChIP-seq_ENCSR000DVM |
Histone_ChIP-seq ENCSR000DVM [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K36me3"]
|
 |
[1.83, 16.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40715158 | 1.27% | 98833 |
| chr1 | 3855314 | 1.55% | 9308 |
| chr2 | 2540128 | 1.05% | 6758 |
| chr3 | 2265072 | 1.14% | 5643 |
| chr4 | 1314449 | 0.69% | 3523 |
| chr5 | 1687794 | 0.93% | 4458 |
| chr6 | 1677559 | 0.98% | 4371 |
| chr7 | 1903034 | 1.19% | 4832 |
| chr8 | 1189490 | 0.82% | 3165 |
| chr9 | 1982558 | 1.43% | 4560 |
| chr10 | 1639299 | 1.23% | 4244 |
| chr11 | 2186437 | 1.62% | 5092 |
| chr12 | 2417490 | 1.81% | 5682 |
| chr13 | 707322 | 0.62% | 1951 |
| chr14 | 1350736 | 1.26% | 3454 |
| chr15 | 1328847 | 1.30% | 3450 |
| chr16 | 2294036 | 2.54% | 5155 |
| chr17 | 2715572 | 3.26% | 6152 |
| chr18 | 501290 | 0.62% | 1484 |
| chr19 | 2972966 | 5.07% | 6139 |
| chr20 | 1512208 | 2.35% | 3427 |
| chr21 | 535504 | 1.15% | 1305 |
| chr22 | 1603527 | 3.16% | 3257 |
| chrX | 517703 | 0.33% | 1375 |
| chrY | 16823 | 0.03% | 48 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 98833 | 140 | 8416 | 411.96 | 303 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF195VOR.bed.gz | 1.85 MB | a394aa6f2d527093de7ca74ff0df500e |
| ENCFF195VOR.tabix.bed.gz | 953.03 KB | 41aaaca307a7f070ee4e724a99c86532 |
| ENCFF195VOR.tabix.bed.gz.tbi | 159.87 KB | 1b67e7f362278ca496a8a67aff85aa26 |
| genomic_resource.yaml | 2.91 KB | 410aa54bb315942afec1f87c32f7ce5a |
| statistics/ |