Resource
| Id | Histone_ChIP-seq/ENCSR000DVF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DVF [biosample_summary="Homo sapiens kidney epithelial cell" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN518GDE|/analyses/ENCAN518GDE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF062OQW|/files/ENCFF062OQW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10139339 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF959JAQ|/files/ENCFF959JAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15906256 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DVF | float |
Histone_ChIP-seq_ENCSR000DVF |
Histone_ChIP-seq ENCSR000DVF [biosample_summary="Homo sapiens kidney epithelial cell" and target="H3K27me3"]
|
 |
[1.61, 30.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34803615 | 1.08% | 61048 |
| chr1 | 3570403 | 1.43% | 6438 |
| chr2 | 2190761 | 0.90% | 3931 |
| chr3 | 1576412 | 0.79% | 3038 |
| chr4 | 1132602 | 0.60% | 1647 |
| chr5 | 1567406 | 0.86% | 2710 |
| chr6 | 1470594 | 0.86% | 2624 |
| chr7 | 1601974 | 1.01% | 2531 |
| chr8 | 1157794 | 0.80% | 2059 |
| chr9 | 1765967 | 1.28% | 2885 |
| chr10 | 1827952 | 1.37% | 3275 |
| chr11 | 2484763 | 1.84% | 4510 |
| chr12 | 1533313 | 1.15% | 2616 |
| chr13 | 615246 | 0.54% | 1010 |
| chr14 | 1087488 | 1.02% | 1914 |
| chr15 | 1122893 | 1.10% | 2091 |
| chr16 | 1423733 | 1.58% | 2409 |
| chr17 | 2335905 | 2.81% | 3935 |
| chr18 | 536623 | 0.67% | 1040 |
| chr19 | 1725968 | 2.94% | 2666 |
| chr20 | 1756280 | 2.73% | 3063 |
| chr21 | 524020 | 1.12% | 1038 |
| chr22 | 1131003 | 2.23% | 2147 |
| chrX | 664515 | 0.43% | 1471 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61048 | 190 | 21406 | 570.1 | 348 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF532QZH.bed.gz | 1.18 MB | c280edae639ec9ce202cea427d20e0dc |
| ENCFF532QZH.tabix.bed.gz | 609.13 KB | 39e64430faf7c17621a2090bc4cf1427 |
| ENCFF532QZH.tabix.bed.gz.tbi | 145.89 KB | 9d8b848656e4bfb1fb9e5c7e6a37e94b |
| genomic_resource.yaml | 2.72 KB | 0bd270129a2a7acfa083b08a802df82c |
| statistics/ |