Resource
| Id | Histone_ChIP-seq/ENCSR000DUD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DUD [biosample_summary="Homo sapiens HepG2" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN496REV|/analyses/ENCAN496REV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF130PYS|/files/ENCFF130PYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12673870 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF660VAM|/files/ENCFF660VAM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12822435 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DUD | float |
Histone_ChIP-seq_ENCSR000DUD |
Histone_ChIP-seq ENCSR000DUD [biosample_summary="Homo sapiens HepG2" and target="H3K36me3"]
|
 |
[1.8, 12.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35428078 | 1.10% | 152180 |
| chr1 | 2846475 | 1.14% | 12863 |
| chr1_KI270711v1_random | 173 | 0.41% | 1 |
| chr2 | 3728079 | 1.54% | 15614 |
| chr3 | 1947894 | 0.98% | 8827 |
| chr4 | 971200 | 0.51% | 4688 |
| chr5 | 1245399 | 0.69% | 5964 |
| chr6 | 2109988 | 1.24% | 8843 |
| chr7 | 1417275 | 0.89% | 6664 |
| chr8 | 1035912 | 0.71% | 4994 |
| chr9 | 1523329 | 1.10% | 6735 |
| chr10 | 1399145 | 1.05% | 6433 |
| chr11 | 1691523 | 1.25% | 7496 |
| chr12 | 1602181 | 1.20% | 7299 |
| chr13 | 591760 | 0.52% | 2918 |
| chr14 | 1219717 | 1.14% | 5241 |
| chr15 | 949045 | 0.93% | 4456 |
| chr16 | 2587478 | 2.86% | 9330 |
| chr17 | 2613688 | 3.14% | 10317 |
| chr17_GL000205v2_random | 172 | 0.09% | 1 |
| chr18 | 409286 | 0.51% | 2045 |
| chr19 | 1680897 | 2.87% | 6951 |
| chr20 | 2280967 | 3.54% | 7552 |
| chr21 | 350471 | 0.75% | 1560 |
| chr22 | 1048243 | 2.06% | 4361 |
| chrUn_GL000195v1 | 193 | 0.11% | 1 |
| chrX | 174767 | 0.11% | 1012 |
| chrY | 2821 | <0.01% | 14 |
| 3339 contigs with no values (128666388 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 152180 | 105 | 3886 | 232.8 | 182 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF524PMT.bed.gz | 2.61 MB | 40fba3eb33da3f786dca01e156e5a083 |
| ENCFF524PMT.tabix.bed.gz | 1.37 MB | 035c22aa8e0c380cc61326b0723c57d5 |
| ENCFF524PMT.tabix.bed.gz.tbi | 194.93 KB | 5987ce9bfc0c82a5b9a3db5336e1352d |
| genomic_resource.yaml | 2.37 KB | 9d0a906eaf6b7b401ffb40faa8360316 |
| statistics/ |