Resource
| Id | Histone_ChIP-seq/ENCSR000DUA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DUA [biosample_summary="Homo sapiens HeLa-S3 G1b phase" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: G1b phase output_type: replicated peaks audit_internal_action: Released analysis {ENCAN814YZN|/analyses/ENCAN814YZN/} has in progress subobject document {a6216f23-9635-413b-b9d0-0b35739abb65|/documents/a6216f23-9635-413b-b9d0-0b35739abb65/} audit_internal_action: Released analysis {ENCAN814YZN|/analyses/ENCAN814YZN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF470WRZ|/files/ENCFF470WRZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13216300 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF847DCI|/files/ENCFF847DCI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 10771722 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DUA | float |
Histone_ChIP-seq_ENCSR000DUA |
Histone_ChIP-seq ENCSR000DUA [biosample_summary="Homo sapiens HeLa-S3 G1b phase" and target="H3K4me3"]
|
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[1.94, 108] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27249177 | 0.85% | 21774 |
| chr1 | 2714325 | 1.09% | 2226 |
| chr2 | 1760382 | 0.73% | 1419 |
| chr3 | 1484132 | 0.75% | 1125 |
| chr4 | 1029974 | 0.54% | 809 |
| chr5 | 1283106 | 0.71% | 951 |
| chr6 | 1627082 | 0.95% | 1261 |
| chr7 | 1263649 | 0.79% | 1060 |
| chr8 | 989774 | 0.68% | 767 |
| chr9 | 1156622 | 0.84% | 907 |
| chr10 | 1104706 | 0.83% | 840 |
| chr11 | 1459823 | 1.08% | 1098 |
| chr12 | 1502320 | 1.13% | 1163 |
| chr13 | 536049 | 0.47% | 421 |
| chr14 | 935405 | 0.87% | 718 |
| chr15 | 899541 | 0.88% | 695 |
| chr16 | 1171800 | 1.30% | 965 |
| chr17 | 1656798 | 1.99% | 1337 |
| chr18 | 453601 | 0.56% | 338 |
| chr19 | 1747533 | 2.98% | 1591 |
| chr20 | 704925 | 1.09% | 589 |
| chr21 | 289531 | 0.62% | 257 |
| chr22 | 605542 | 1.19% | 533 |
| chrX | 872557 | 0.56% | 704 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 21774 | 143 | 13797 | 1251.45 | 1050 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF469OXD.bed.gz | 573.23 KB | 44c07bc1e0e662a6cb842849a20a44de |
| ENCFF469OXD.tabix.bed.gz | 251.35 KB | b1ab0fb58bc878f08a81b01edc1f458b |
| ENCFF469OXD.tabix.bed.gz.tbi | 121.81 KB | 19525528df42d933561fa513735ee55b |
| genomic_resource.yaml | 2.89 KB | e5f9f0a46b588260f80ecf9db8475623 |
| statistics/ |
