Resource

Id Histone_ChIP-seq/ENCSR000DUAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DUA [biosample_summary="Homo sapiens HeLa-S3 G1b phase" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR000DUA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002791/
  • biosample_summary: Homo sapiens HeLa-S3 G1b phase
  • date_created: 2013-12-12T06:57:41.411678+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DUA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: G1b phase
  • status: released
  • submitter_comment: Replicate 1,1 of this experiment was previously attributed to biosample ENCBS432ENC and replicate 2,1 of this experiment was previously attributed to biosample ENCBS432ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DUA float

Histone_ChIP-seq_ENCSR000DUA

Histone_ChIP-seq ENCSR000DUA [biosample_summary="Homo sapiens HeLa-S3 G1b phase" and target="H3K4me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DUA [1.94, 108]
n
27,249,177
mean
40
sd
20.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 272491770.85% 21774
chr1 2714325 1.09% 2226
chr2 1760382 0.73% 1419
chr3 1484132 0.75% 1125
chr4 1029974 0.54% 809
chr5 1283106 0.71% 951
chr6 1627082 0.95% 1261
chr7 1263649 0.79% 1060
chr8 989774 0.68% 767
chr9 1156622 0.84% 907
chr10 1104706 0.83% 840
chr11 1459823 1.08% 1098
chr12 1502320 1.13% 1163
chr13 536049 0.47% 421
chr14 935405 0.87% 718
chr15 899541 0.88% 695
chr16 1171800 1.30% 965
chr17 1656798 1.99% 1337
chr18 453601 0.56% 338
chr19 1747533 2.98% 1591
chr20 704925 1.09% 589
chr21 289531 0.62% 257
chr22 605542 1.19% 533
chrX 872557 0.56% 704
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21774 143 13797 1251.45 1050
global segment-length histogram

Files

Filename Size md5
ENCFF469OXD.bed.gz 573.23 KB 44c07bc1e0e662a6cb842849a20a44de
ENCFF469OXD.tabix.bed.gz 251.35 KB b1ab0fb58bc878f08a81b01edc1f458b
ENCFF469OXD.tabix.bed.gz.tbi 121.81 KB 19525528df42d933561fa513735ee55b
genomic_resource.yaml 2.89 KB e5f9f0a46b588260f80ecf9db8475623
statistics/