Resource
| Id | Histone_ChIP-seq/ENCSR000DTZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DTZ [biosample_summary="Homo sapiens HeLa-S3 G1b phase" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: G1b phase output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN453VUB|/analyses/ENCAN453VUB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF867UVJ|/files/ENCFF867UVJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11611248 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF837QHG|/files/ENCFF837QHG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12877429 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DTZ | float |
Histone_ChIP-seq_ENCSR000DTZ |
Histone_ChIP-seq ENCSR000DTZ [biosample_summary="Homo sapiens HeLa-S3 G1b phase" and target="H3K36me3"]
|
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[1.86, 9.09] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10263572 | 0.32% | 49572 |
| chr1 | 1163270 | 0.47% | 5637 |
| chr2 | 427177 | 0.18% | 2203 |
| chr3 | 647875 | 0.33% | 3208 |
| chr4 | 97583 | 0.05% | 563 |
| chr5 | 585666 | 0.32% | 2685 |
| chr6 | 317989 | 0.19% | 1630 |
| chr7 | 443273 | 0.28% | 2220 |
| chr8 | 415063 | 0.29% | 1984 |
| chr9 | 731552 | 0.53% | 3249 |
| chr10 | 310529 | 0.23% | 1582 |
| chr11 | 645523 | 0.48% | 2941 |
| chr12 | 597670 | 0.45% | 2906 |
| chr13 | 115384 | 0.10% | 601 |
| chr14 | 309482 | 0.29% | 1574 |
| chr15 | 538220 | 0.53% | 2501 |
| chr16 | 522364 | 0.58% | 2538 |
| chr17 | 676140 | 0.81% | 3330 |
| chr18 | 159065 | 0.20% | 824 |
| chr19 | 569322 | 0.97% | 2701 |
| chr20 | 426241 | 0.66% | 1896 |
| chr21 | 163562 | 0.35% | 789 |
| chr22 | 113938 | 0.22% | 603 |
| chrX | 286684 | 0.18% | 1407 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 49572 | 120 | 1687 | 207.04 | 176 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF056OVB.bed.gz | 866.46 KB | a5296d2fc22bac389a6d32afb83c8b80 |
| ENCFF056OVB.tabix.bed.gz | 463.93 KB | 64f79a7b9cd89b1839e84695c7a7a422 |
| ENCFF056OVB.tabix.bed.gz.tbi | 139.03 KB | b71857f63ab434eea965848a37f6bd0a |
| genomic_resource.yaml | 2.67 KB | 36f0414c8b0d7affe709a86c149abc4a |
| statistics/ |
