Resource

Id Histone_ChIP-seq/ENCSR000DRXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DRX [biosample_summary="Homo sapiens GM12878" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR000DRX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2014-02-12T22:41:18.593940+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DRX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 2,1 of this experiment was previously attributed to biosample ENCBS195XMM and replicate 1,1 of this experiment was previously attributed to biosample ENCBS195XMM but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DRX float

Histone_ChIP-seq_ENCSR000DRX

Histone_ChIP-seq ENCSR000DRX [biosample_summary="Homo sapiens GM12878" and target="H3K27me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DRX [2.07, 10.1]
n
5,902,620
mean
4.33
sd
0.972

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 59026200.18% 25814
chr1 642296 0.26% 2837
chr2 499354 0.21% 2213
chr3 327327 0.17% 1480
chr4 194312 0.10% 831
chr5 294017 0.16% 1283
chr6 332684 0.19% 1458
chr7 283666 0.18% 1244
chr8 239256 0.16% 1066
chr9 272923 0.20% 1184
chr10 336405 0.25% 1492
chr11 434941 0.32% 1909
chr12 305439 0.23% 1286
chr13 106490 0.09% 473
chr14 170457 0.16% 749
chr15 231464 0.23% 987
chr16 147930 0.16% 639
chr17 364244 0.44% 1467
chr18 115865 0.14% 556
chr19 131598 0.22% 544
chr20 250351 0.39% 1107
chr21 47589 0.10% 209
chr22 138176 0.27% 605
chrX 35836 0.02% 195
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25814 125 1627 228.66 191
global segment-length histogram

Files

Filename Size md5
ENCFF695ETB.bed.gz 435.34 KB 850862bc88b52830686d31105976ff65
ENCFF695ETB.tabix.bed.gz 242.33 KB d1e20a03914e965740f1c46f80acd9cd
ENCFF695ETB.tabix.bed.gz.tbi 114.55 KB ffb28061a5035dca2da6091c3ab72085
genomic_resource.yaml 2.91 KB 370857c8954094f44a9fe87b639d6c6a
statistics/