Resource

Id Histone_ChIP-seq/ENCSR000DRWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DRW [biosample_summary="Homo sapiens GM12878" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR000DRW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2014-02-12T22:52:43.883701+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DRW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 2,1 of this experiment was previously attributed to biosample ENCBS195XMM and replicate 1,1 of this experiment was previously attributed to biosample ENCBS195XMM but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DRW float

Histone_ChIP-seq_ENCSR000DRW
Histone_ChIP-seq ENCSR000DRW [biosample_summary="Homo sapiens GM12878" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DRW [1.78, 13]
n
26,015,928
mean
5.08
sd
1.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 260159280.81% 81541
chr1 2239382 0.90% 7242
chr2 1530718 0.63% 5238
chr3 1405187 0.71% 4684
chr4 689125 0.36% 2284
chr5 1142743 0.63% 3723
chr6 979409 0.57% 3272
chr7 1241060 0.78% 4049
chr8 797421 0.55% 2663
chr9 1395604 1.01% 4225
chr10 1047678 0.78% 3487
chr11 1302672 0.96% 4023
chr12 1294595 0.97% 4135
chr13 333098 0.29% 1240
chr14 783097 0.73% 2595
chr15 804654 0.79% 2647
chr16 1717479 1.90% 5060
chr17 1851399 2.22% 5522
chr17_GL000205v2_random 340 0.18% 2
chr18 326838 0.41% 1168
chr19 2178503 3.72% 5554
chr20 1033037 1.60% 3200
chr21 373005 0.80% 1124
chr22 1232427 2.43% 3399
chr22_KI270733v1_random 115 0.06% 1
chrEBV 59796 34.80% 150
chrUn_GL000195v1 126 0.07% 1
chrX 256420 0.16% 853
3339 contigs with no values (185584418 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81541 115 6021 319.05 244
global segment-length histogram

Files

Filename Size md5
ENCFF268HMO.bed.gz 1.42 MB 36868c82e77a598b6a3b9d8987e40e4a
ENCFF268HMO.tabix.bed.gz 766.11 KB 552dbe64953c3ed0cd702572cb655f8b
ENCFF268HMO.tabix.bed.gz.tbi 142.38 KB e70e950ad2c4c5d0cc70a4556387a014
genomic_resource.yaml 2.68 KB c69cfc4d02e125a1076bdcaed0f6dc1a
statistics/