Resource
| Id | Histone_ChIP-seq/ENCSR000DRS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DRS [biosample_summary="Homo sapiens GM12875" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN764WQM|/analyses/ENCAN764WQM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF693JCT|/files/ENCFF693JCT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13008371 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DRS | float |
Histone_ChIP-seq_ENCSR000DRS |
Histone_ChIP-seq ENCSR000DRS [biosample_summary="Homo sapiens GM12875" and target="H3K4me3"]
|
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[1.9, 87] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27720000 | 0.86% | 27148 |
| chr1 | 2795408 | 1.12% | 2740 |
| chr2 | 1764282 | 0.73% | 1690 |
| chr3 | 1588504 | 0.80% | 1487 |
| chr4 | 1023930 | 0.54% | 975 |
| chr5 | 1367908 | 0.75% | 1251 |
| chr6 | 1406435 | 0.82% | 1425 |
| chr7 | 1303950 | 0.82% | 1328 |
| chr8 | 1057853 | 0.73% | 1020 |
| chr9 | 1124977 | 0.81% | 1125 |
| chr10 | 1164380 | 0.87% | 1140 |
| chr11 | 1508601 | 1.12% | 1405 |
| chr12 | 1521108 | 1.14% | 1487 |
| chr13 | 556686 | 0.49% | 551 |
| chr14 | 934284 | 0.87% | 961 |
| chr15 | 919398 | 0.90% | 868 |
| chr16 | 1112672 | 1.23% | 1085 |
| chr17 | 1681087 | 2.02% | 1592 |
| chr18 | 431797 | 0.54% | 443 |
| chr19 | 1932168 | 3.30% | 1973 |
| chr20 | 625317 | 0.97% | 607 |
| chr21 | 305833 | 0.65% | 296 |
| chr22 | 700179 | 1.38% | 703 |
| chrX | 892650 | 0.57% | 995 |
| chrY | 593 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27148 | 155 | 11005 | 1021.07 | 732 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF770THI.bed.gz | 674.92 KB | e4b5582277d88b55bc18dc00d9526c1e |
| ENCFF770THI.tabix.bed.gz | 297.95 KB | 475adaf40cc4374c666e43a34facb12b |
| ENCFF770THI.tabix.bed.gz.tbi | 134.3 KB | db002392e46e67834f9a160859cf9d74 |
| genomic_resource.yaml | 2.07 KB | e5299fad443700fcf1e50eb4dad3aa75 |
| statistics/ |
